Cellulomonas iranensis: LFM56_14220
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Entry
LFM56_14220 CDS
T07886
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cira
Cellulomonas iranensis
Pathway
cira03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cira00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LFM56_14220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cira03400
]
LFM56_14220
Enzymes [BR:
cira01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LFM56_14220
DNA repair and recombination proteins [BR:
cira03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LFM56_14220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UCN14032
LinkDB
All DBs
Position
complement(3185684..3187348)
Genome browser
AA seq
554 aa
AA seq
DB search
MNRPDGAGTRGRAAEDADALGTYRAMRDFTRTPEPSGAPPAADGAVERRFVVQRHRARRL
HYDVRLELDGVLLSWAVPKGPTLDPAVRRMAVHVEDHPLEYAGFEGVIPRGEYGGGDVIV
WDRGTWVPYKSDDPAAELRDGQLHAELHGERLRGKFLLVRSDRRGRDGGDGKEQWLLIHK
HDEHAVDGWDAEDHPTSVVSGRTNDEVAAAPDRLWRSGVPAAEAEVDLRDASPAPPAPLP
ADDDALAALDDLGASGTWEVHGRRLRVTNLDKELFGGRDGEPPVTKRDLLRYAARVGPVV
LPYLTGRALNMHRFPQGAGTAGFWHKQLPDHAPDWVPRWDRPDVDPGDTTTYLVVDEPAA
LVWAANFGALEWHAWTSRTDAPDLPTYALVDLDPGTSTTWDDLVLLARLHRDAFEHLGVR
AYPKLTGKRGIQIWVPVAPGPSFDDTRAWVERLSRTVGQVVPDLVSWRWEVRERGGHARL
DYTQNAVNKTLVAPYSPRAAAGAPVSAPITWDELDADWLRPDAFTVRTVLDRLADVGDPF
RGVLDAHQVLPPLR
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccgcccggacggcgcgggcacgcgggggcgtgcggcggaggacgccgacgcgctc
ggcacgtaccgcgcgatgcgcgacttcacgcgcacgcccgagccgtccggggcgccgccc
gccgcggacggcgccgtcgagcgccggttcgtggtgcagcggcaccgcgcgcgtcggctg
cactacgacgtccgtctcgagctcgacggcgtgctgctgagctgggccgtgcccaagggc
ccgacgctcgaccccgccgtgcggcgcatggccgtgcacgtcgaggaccacccgctggag
tacgcgggcttcgagggcgtgatcccgcgcggggagtacggcggcggcgacgtgatcgtg
tgggaccgcggcacgtgggtgccgtacaagagcgacgacccggccgcggagctgcgcgac
ggccagctgcacgccgagctgcacggcgagcggctgcgcggcaagttcctgctggtgcgc
agcgaccggcgcgggcgggacggcggcgacggcaaggagcagtggctgctgatccacaag
cacgacgagcacgcggtcgacggctgggacgccgaggaccacccgacgtcggtcgtgtcg
gggcgcaccaacgacgaggtcgcggccgccccggaccggctgtggcgctcgggtgtgccc
gcggccgaggccgaggtggacctgcgcgacgcgtcgccggcaccacccgcacccctgccc
gccgacgacgacgcgctcgcggccctcgacgacctcggcgcgtcgggcacgtgggaggtc
cacggccgacgcctgcgcgtcaccaacctcgacaaggagctgttcggcggccgcgacggc
gagccgcccgtcaccaagcgcgacctgctgcggtacgcggcgcgcgtcgggcccgtcgtg
ctcccgtacctcacggggcgcgcgctcaacatgcaccggttcccgcagggcgccggcacc
gcggggttctggcacaagcagctgcccgaccacgcacccgactgggtgccgcggtgggac
cgccccgacgtcgacccgggcgacaccaccacctacctcgtggtcgacgagcccgcggcg
ctcgtgtgggccgcgaacttcggcgcgctcgagtggcacgcgtggacgtcgcgcaccgac
gcgcccgacctgccgacttacgccctggtcgacctcgaccccgggacgtcgaccacgtgg
gacgacctcgtgctgctggcccgcctgcaccgcgacgcgttcgagcacctgggcgtccgc
gcgtaccccaagctcaccgggaagcggggcatccagatctgggtcccggtggccccgggg
ccgtcgttcgacgacacgcgcgcgtgggtcgagcggctctcgcggacggtcgggcaggtc
gtgcccgacctcgtgagctggcggtgggaggtgcgcgagcgcggcggccacgcgcggctc
gactacacgcagaacgccgtcaacaagaccctcgtcgcgccgtacagcccgcgcgccgcc
gccggcgcgcccgtgtcggcgccgatcacgtgggacgagctcgacgccgactggctgcgc
cccgacgcgttcactgtgcgcacggtcctcgaccggctcgccgacgtcggcgacccgttc
cgcggcgtgctcgacgcgcaccaggtgctgccgccgctgcggtga
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