Campylobacter insulaenigrae: CINS_1003
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Entry
CINS_1003 CDS
T03555
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cis
Campylobacter insulaenigrae
Pathway
cis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CINS_1003 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cis03400
]
CINS_1003 (mfd)
Enzymes [BR:
cis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CINS_1003 (mfd)
DNA repair and recombination proteins [BR:
cis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CINS_1003 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJC87965
UniProt:
A0A0A8H2T4
LinkDB
All DBs
Position
complement(953296..956232)
Genome browser
AA seq
978 aa
AA seq
DB search
MQARLYEYLQDIQTELIICEDDKEADDLAQVCLYLGFKTYVLPDFRAQFGSDLRSFSKEL
FEICKVLNAYHKEAQSKILISPIRTILQKLPGKNNLQNIILKSNSSIKLEKFKEEMLHSG
YEFVDIVQDKGEISIRGEIIDIFAINEDQPFRILLFSDEVESIRYFDVNSQKSIPKELSS
IEICPFLSNLNQDQYNNLQEKIRNFQGQSIISDVNSLGFWCIDNFYDYLNLNFISVKEFQ
SNDFEEDISKINQNILPQAKYCKNLLSTYNQDFFSFHKDKNIIVLAKNEVLFRALNIEHS
QNITLKICDLRLNLITKEKLIVSLNKKQKNKRIKKANLIIDELRVGDYIVHEDYGVAKFL
GLEIIVIAGAKKEFVALGYLNNDKLLLPVENLYMIDKYIGVSGGIPLLDKLGKGTFLKLK
EKLKEKLFAIASNIVSLAAARSLIKAKNLYISENLQDEFINSAGFAYTKDQEQVCKEIFQ
DIQSSKVMDRLLSGDVGFGKTEIAMNAIFACVKSGFTALFFVPTTLLSSQHFKTLKRRFT
SFNINVFKLDRFTNSKEKKQILEFLKEKKPCVVVGTHSLLNIECENLGLIVIDEEHKFGV
KQKEKLKEFSKNSHILSMSATPIPRSLNQALSSLKSYSVLQTPPDDRLDVRTFVRESSDA
LVKEAISRELRRAGQIFYIHNHIASINESKKYLLELFPHLKILILHSKIDAKTTEEEMLR
FENKEYDLLLCTSIVESGIDLPNVNTIIIENSDRFGMADLHQLRGRVGRSSIQGYCYFLI
EDKEKLTKDSLKRLTSLESNSYLGSGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYL
KMLEDEINKLSKNETIKENKIDLKLNVNAFINSEYINEDRLRLELYRRLSKCASVSEIYE
IESEMIDRFGKLDIYTKQFLDLITIKILASDDYKLISNFEQNICFVKNDDNKEIVKAKSK
DDDDILDTILTYLRRTKS
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctagattatatgagtatttgcaagatatacaaactgagttaataatttgcgag
gatgataaagaggctgatgatttagctcaagtttgtttgtatttgggttttaaaacttat
gttttaccagattttagagcgcaatttggaagcgatttgcgttctttttcaaaagagtta
tttgaaatttgtaaagttttaaatgcttatcacaaagaagcacaaagtaaaattttaatt
tctcctataagaactatactacagaaattaccaggaaaaaataatttacaaaatattatt
ctaaaaagcaattcatcaattaaattagaaaaatttaaagaggaaatgctgcatagcgga
tatgaatttgtagatattgttcaagataaaggagaaatttctatccgtggagagataatt
gatatttttgctataaatgaagatcagccatttagaattttacttttttcagatgaagta
gaaagtataagatattttgatgttaattctcaaaaatctatacctaaagaactttctagt
atagaaatatgtccttttttaagtaatttaaatcaagatcaatataataatttgcaagaa
aaaattagaaattttcaaggtcaaagcattattagcgatgttaattctttaggtttttgg
tgtattgataatttttatgattatttaaatttaaattttataagcgttaaagaatttcaa
agcaatgattttgaagaggatattagtaaaattaatcaaaatattttacctcaagctaaa
tattgtaaaaatttattaagcacctacaatcaagattttttttcttttcataaagataaa
aacattatagttctggctaagaatgaagttttatttagggctttaaatatagagcattct
caaaatattactctaaagatatgcgatttgagattaaatttaattactaaagaaaaatta
attgtttctttgaataaaaagcaaaaaaataaaagaattaaaaaagcaaatttgattata
gatgaacttagagtaggtgattatatagttcatgaagattatggagtagctaaattttta
ggacttgagattattgtgattgctggagcaaaaaaagaatttgtggcacttggctattta
aataatgataaattgcttttacctgtagaaaatttatatatgatagataaatatataggt
gttagtggtggtattcctttgcttgataagcttggcaaaggaacgtttttaaaacttaag
gaaaaacttaaagaaaaactttttgctattgcatccaatattgtgtcattagctgctgca
agatcgttaattaaagctaaaaatttatatatttctgaaaatttacaagatgaatttata
aatagtgcaggttttgcttatactaaggatcaagagcaagtatgtaaagaaatctttcaa
gatattcaaagttctaaagttatggatagattgcttagtggggatgttggatttggtaag
acagaaattgctatgaatgctatatttgcttgtgtaaaaagcggttttactgctttattt
tttgtacctacaactttactttcttctcaacattttaagacattaaagcgtagatttact
agttttaatattaatgtttttaaacttgatcgttttactaattcaaaagaaaaaaaacaa
attttagaatttttaaaagaaaaaaagccttgtgtagttgttggaactcattctctttta
aatatagaatgtgaaaatttaggtttgattgtgattgatgaagagcataaatttggtgta
aagcaaaaagaaaaattaaaagaatttagtaaaaattcgcatattctttcaatgtctgca
acacctataccaagaagtttaaatcaagcattgagttctttaaaatcttacagtgtttta
caaactccacctgatgatcgtttagatgtgaggacttttgttagagagagtagtgatgct
ttggttaaggaagccatttcgagggaattaagacgagcgggtcaaatattttatattcac
aatcatattgcaagtattaatgagagtaagaaatatcttttagaattatttccacatttg
aaaattttaatattacattctaagattgatgctaaaacaactgaagaagaaatgcttaga
tttgagaataaagaatatgacctgttgctttgtacatctatagttgaaagtggtattgat
cttccaaacgtaaatactattataattgaaaattcagatcgttttggtatggctgattta
catcaactaagaggtagagtaggacgaagttctatacaaggatattgttattttttaatt
gaagataaggaaaaacttacaaaagattctttaaaaagattaactagtttagagagtaat
tcttatttgggttcaggctctgtacttgcttatcatgatttagaaattcgtggaggaggt
aatttattaggtgttgatcaaagtggtcatattgaacaaattggttacagtttatatctt
aaaatgcttgaagatgaaatcaataaattaagcaaaaatgagacaataaaagaaaacaag
attgatttaaaactaaatgtcaatgcttttattaatagtgaatatatcaacgaggatcgt
ttaagattagaactttacagaagacttagtaaatgtgcgagtgtgagtgaaatatatgaa
atagaaagtgaaatgattgatcgctttggaaaattagatatttatacaaaacaattttta
gatttaattacaataaaaattttagctagtgatgattataaattaatcagtaactttgaa
caaaatatttgttttgtaaaaaatgatgataataaagaaattgtcaaggcaaagagtaaa
gatgatgacgatatattagatacgatactcacttatcttagaagaacaaaatcatga
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