Citrus sinensis (Valencia orange): 102607821
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Entry
102607821 CDS
T02983
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
cit
Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cit03016
]
102607821
Enzymes [BR:
cit01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
102607821
Transfer RNA biogenesis [BR:
cit03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
102607821
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
Flavodoxin_5
DUF6679
Motif
Other DBs
NCBI-GeneID:
102607821
NCBI-ProteinID:
XP_006473494
LinkDB
All DBs
Position
5:complement(join(36660383..36660523,36660604..36660814,36660890..36661047,36661291..36661377,36661470..36661660,36661955..36662130,36662286..36662401,36662611..36663480))
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AA seq
649 aa
AA seq
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MSSSSIRAHLALVALLSATTFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTG
TSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMN
WIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEG
DVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEED
VVESEMVDLEDIAGKGPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSG
VKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQW
KMDDPIEIVNTAIDLHAKMIKQMKGVPGVTLERLNEGLTPRHCALSLVGEPIMYPEINTL
VDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL
DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT
MENVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWIDYEKF
HDLVASGRPFSSKDYMAASPHWAVYGAEEGGFDPDQSRYRKERHHKLSR
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcttcttctatacgtgctcacctcgctcttgtggctctcctctcagccaccacc
ttttatttcgcctacaaatctcgccgcctcaataaattcctccgccactcagattaccgc
aaaaaacctgaaaatcctaaccccaataaaggaaaactttttttcatctcccaaaccggt
acgtccaaaaccctagctaagcgtctccatgctctcttaacctccaatgaccttctattc
gacctcgtcgatccacaaacctacgagcctgaagacctatccaaagaagccctagtttta
atcgttgcctcctcttgggaagatggaaagccacctgaagcggcgaaattttttatgaat
tggattgacgaaagcgcgaatgattttagagtgggttcgttgctgctgtcaaattgtaag
tttgcggtttttggagtgggaagtaaatcgtacgagaaaacttttaatatggtggcgaaa
gatttgtcgaagaaaatgagagaactgggtgcgggtgaggtcttgccggttgttgagggt
gacgtggatggtggtgagctggacgttgtttttgaggattggagtaaaagggtggttgct
attttgaagagcggtggtgatcgactggagaatggtattgtcaatggtgaggctagtatt
gtgggcgtggaaagtgatcctgtttatcatgagtatgacgatgatgaggaggaggaggac
gtggttgagtcggagatggttgatctcgaggatattgcaggtaaagggccttcgaggagg
tcggtaaatgtggctgaaaccaatggaaaagttaaagatagcaagagggatatggtcaca
ccagtgattagagcaagtctagagaagcaggggtataaaattattggttcacatagtggt
gtcaaaatctgtagatggaccaagtcacaacttagaggccgaggaggttgctacaagcac
tcattttatggcattgaaagccatagatgcatggaggctacccctagtttggcatgtgcc
aacaaatgtgttttctgctggaggcaccacacaaatcctgtagggaagagttggcagtgg
aaaatggatgatccaatagagatagtgaatacagcaatagacctccatgcaaagatgatt
aagcaaatgaaaggagttcctggcgttacattggagcgattgaacgaaggccttactcca
aggcactgtgccttatcacttgttggcgaaccaattatgtatccagagatcaatactctt
gtggatgaactgcatcgaagacggatttctacatttcttgttaccaatgctcagtttcct
gacaaaattaaattactaaagccagttactcagttatatgtgagtgtagatgctgcaaca
aaggatagcttgaaggcaattgatagacctctctttggagacttttgggagagattcctg
gattctttgaaagctctgagagataaacaacagcgaacagtttatcgcttgacactggtg
aaagggtggaatacagaagacatagaagcttattctaaactctttagtattggaaatcca
gattttgtagaaatcaaaggcgttacctactgtgggtcatctgctacatcaaaattgaca
atggagaatgtcccctggcacgccgacgtgaaagccttctctgaagccttagctttgaga
agtgaaggggagtacgaggttgcatgtgagcatgtccactcgtgctgtgttctcttggca
aaaacagagaggttcaaggtcaatggccaatggttcacatggatagactatgaaaagttc
catgacctggttgcttcaggaagacctttcagcagcaaggactacatggctgcctcccca
cactgggctgtctatggtgctgaggaaggtggatttgacccagatcagtctcggtatagg
aaggagcgacatcacaaattaagtcgctga
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