KEGG   Citrus sinensis (Valencia orange): 102608121
Entry
102608121         CDS       T02983                                 
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    102608121
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cit03400]
    102608121
Enzymes [BR:cit01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102608121
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     102608121
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C PTCB-BRCT RNA_ligase LIG3_BRCT
Other DBs
NCBI-GeneID: 102608121
NCBI-ProteinID: XP_052290466
LinkDB
Position
9:complement(join(31748434..31749145,31749427..31749582,31749798..31749959,31750100..31750230,31750455..31750560,31750674..31750773,31750871..31750996,31751770..31751973,31752103..31752190,31752324..31752372,31752481..31752576,31752948..31753031,31753577..31753635,31753731..31753765,31753859..31753983,31754444..31754519,31755194..31755352,31755508..31755514,31755603..31755640,31755762..31755841,31756094..31756165,31756538..31756629,31756719..31756793,31757237..31757373,31757477..31757562,31758585..31758676,31759238..31759570))
AA seq 1159 aa
MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRER
GSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGTAPNAGNFPMVAAEVLQRRQGMI
SGGLTIKELNDLLDRLASSENRAEKTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR
KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERH
ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGI
VLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAER
PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERP
DVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV
HSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDM
VFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHY
SWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDR
SEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVILGLALRRLKLEISFHG
GKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKE
QKSEEYEYSLKPTGMQESYLELCEEDLDMEEPSSTLETSDKQNVSSFPDGDGKQRGTRGV
SPASPKREGKRKRGRPAGGSAKKRKSTVNLARRKRPHVRNKPSKIYQNESDESNASDETE
KKEEINREENHEDREMDDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRAP
DIEMRERYHSKDSETTDKQQVDAVQAMLLDMIPSLGMKNEKTTNPIPKEESSSAEPSAEP
TKKKKVSYKDIASKLLKDW
NT seq 3480 nt   +upstreamnt  +downstreamnt
atgacgaagacagaagagaccgaggtgatcgttttagtgagtcttttcaactggatacaa
aaaaccaaaccagcggccaagaaacggtccaagttccgcaaatttctcgatacttactgt
gactcggtggactactttagtgcattgcggctgattctgccgtcgttggaccgggaaaga
ggcagctatggcctcaaagagtcggtgctcgccaactgcctcatcgatgccctgggcatg
tctaaagactccgctgacgccgttcggcttattaattggcgcaagggaggcaccgctcct
aatgccggaaatttcccaatggtcgctgctgaggttctgcaacgtaggcaaggaatgatt
tctggtggacttacaattaaggaattaaatgacttgcttgatcgcttggcttcaagtgaa
aacagggctgagaagacttcagttctgtctactctaattaagaagacaaatgcacaggaa
atgaagtggattatcatgataattctgaaagatctaaagttgggaattagtgaaaagagc
atattccatgagtttcatccggatgctgaggacctgtttaatgtgacatgtgacttaaaa
ctggtttgtgagaagttaaaggatcgaaaccagagacataaacggcaggacatcgaagtt
gggaaagctgtgcgcccacaactagctatgagaataggtgatgcacatgctgcctggaga
aagcttcatgggaaagaagtggtcattgagtgcaaatttgatggtgatcgcattcaaatt
cataaaaatggttcagaaatacactacttctcaaggagctttcttgatcactctgaatat
ggacatgcgatgtcaaagattattgagcaaaacgttttggttgacaggtgcatactcgat
ggtgaaatgttggtctgggacacttctttgaatcgatttgcagaatttggttcaaatcag
gaaatagccaaggcagcgagggatggactttcaagtgatcgacagttgtgctattttgca
tttgatgttctgtatgtgggagatactagcgtcattcaccagagcttgaaggaacgacat
gagcttctccaaaaagttgtgaagccttcgaaaggtcgtttagagaccttagtacctgat
catggtctcaattctcacgtgagacctcaaggggaaccttgctggtcacttgttgctcat
aatgtggatgaggttgagaagttcttcaaagaaaccattgagaatagggatgaaggaatt
gtattgaaagaccttggttcgaaatgggagccaggtgatcgaagtggaaagtggttgaag
ctgaagcctgagtacatccgtgctggttcagacttggatgtactaataattggaggatat
tatggctccggtcgtcgtggaggggaggttgctcagttcttggttgccctggcagagcgt
ccagctccagatacatatcctagaagatttatctccttttgccgagtgggtactggtctc
tctgatgaggaactagatgctgttgtaactaagttgaagccttattttaggaaatatgaa
tatccaaaaagggcacctccaagtttttatcaagttacaaataattcaaaggagagacct
gatgtttggattgagagccctgagaaatcaataatactttctattaccagtgatattcga
accataaggtctgaggttttttctgcaccatacagcctgagatttccacgcattgataga
gtgagatatgacaagccttggcatgattgccttgacgtgcagtcatttgtagaacttgtg
cattcaagtaatggcaccactcagaaggggaaagaatatggaggcttgcaagatgataag
ccaaaacaattcagatcctccagaaagggagagaaaaagaatgtgtctattgttccttct
cattttcttcagactgatgtttctgacataaagggggaaacctcaatattttcagatatg
gtgttttattttgttaatgtacctccagcctattcccttgactccttgcacaaaatggtt
gttgagaatggaggaacattttcaatgaatttgaataactcagttacccactgtgttgca
gctgataacaaagggcttaaatatgaggcagcaaaacgtcgtggagatgttattcattac
tcttgggtcttggattgttgttcacaaaagaagcttctccaattgcagccaaagtactac
cttcatctatctgactcttcgaagaaaaagctacaagaagaagttgatgaattttctgac
ctgtacttttgggatcttgaccttgcagatatcaaacagctcttaagcaatgttgataga
tcagaagaccccaaaactattgattattataagaagaagtactgtccacaggacaagtgg
tcttgctttcatggctgctgcatttacttctaccattcaacagagcctttgagtcctgat
tgggaagttatattggggcttgccctgaggagattgaagcttgaaatttcctttcatggc
ggtaaagtctgcaacaatcttgcaaatgctacccacgtggtggtcttgtcagtactggga
tatgatgtgaactttaattctcttacagaaagtttcactgccagagagaaacatctttta
tggaacaagaagttgcatgttgttagatcccagtggttggaagattgcttggcgaaggag
caaaagtcggaagaatacgaatacagcttgaagcccactggcatgcaagagtcgtacctt
gaattgtgcgaagaagacctggatatggaagaaccctcatctacattggaaacttcagac
aaacagaatgtgtcatctttcccggacggtgatggtaagcagagaggaaccagaggtgtt
tcccctgcctcaccaaagagagaaggcaaaaggaaaagaggaagacctgctggtggaagc
gcaaagaaaagaaaatcaactgtcaacctagctcggagaaaaaggccacatgttagaaat
aaaccttcaaagatataccaaaatgaatctgatgaaagtaatgcttctgatgaaacagaa
aaaaaggaagagatcaatagggaagagaatcatgaagatcgtgaaatggatgatgaggaa
aatctggaaactcgacagactaatgtagtggaagatttagaatcattagaccgaggcaag
gcacttcaacaagaggttgtcaaagattttgggaaagaaaaacagactgttagagctcct
gatattgaaatgagagaaaggtatcacagcaaagacagtgagacaactgataagcagcaa
gttgatgcagttcaagccatgttactggacatgattccaagccttggaatgaagaatgaa
aaaactacaaatccgattccgaaagaagagtcatcatctgcagaaccaagtgcagagcct
acaaagaaaaagaaagtcagctacaaggatattgccagcaaactactcaaggattggtag

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