Citrus sinensis (Valencia orange): 102610910
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Entry
102610910 CDS
T02983
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102610910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102610910
03019 Messenger RNA biogenesis [BR:
cit03019
]
102610910
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102610910
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102610910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Ribonuc_2-5A
Motif
Other DBs
NCBI-GeneID:
102610910
NCBI-ProteinID:
XP_006481885
LinkDB
All DBs
Position
6:complement(join(21695113..21695127,21695295..21697214,21697737..21698186,21698284..21698409,21698877..21699134,21699461..21699562,21701257..21701607))
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AA seq
1073 aa
AA seq
DB search
MEMENPRRPFDRSREHGLVKKPRLTEDPTRPFTQRSALAAAAPRYNSATRDSDVEERGGG
AYQPQQPHHELVSQYKKALAELTFNSKPIITNLTIIAGENVHAAKAIAATICANILEVPS
DQKLPSLYLLDSIVKNIASDYIKYFAARLPEVFCKAYRQVDAAVRSSMRHLFGTWKGVFP
PMTLQIIEKELGFTSVVNGSSSGATTSRHDSQSQRPPHSIHVNPKYLERQRLQQTSRAKG
LVNDMNGAVASSTVDAERPDRASSMSASRPWVDPTVKMQHSQRDALSEPIHEKNIGGAYG
DYDYGSELSRSSGLGSGRTTGRVSDQGYEKPWYGSGSNISETIAGQRNGFNKKQGFPNYS
ASKSANAAAHLQQVQSIPKSSSSGLSSWKNSEEEEFMWDMHPRTSDHDAANISKNSRKDH
LAVDGPEKLELDNHLRKPQGIHDVSSSFDIETSSDSLSTEQKDQAAYRHQMPSPWQLKEA
DGLIAATLGGFPASSSSSLARTGGHPPVGSSHIGTSGFGTLASSASGSTGSLATQRFQSA
PAGSPSGHSPMHHHSPSPSVPAHHPRQNMQNCTDRDYPHAQPLSRPDLKTSSFPGLVSSG
PRGHSTKDLPSILHPNSQLGNLHKVQPQDLKGSSPAVTSFQLNCQSQKPLLPQVSNFGAP
SSKEAVSDHSNPLDAEGLGQSGTSSLLASVLKSGILNSSITDGLANRALREVGQIPLQLD
IQPPLPSGPPPSLLTSSGARVGSGSSSGPSQEDPPATMTGSQRKVEQPPLPPGPPPSSLA
SSTSPKVSSVESKTSNPISNLLSTLVAKGLISASKTEPPSHTTPQVTSRMQNESPGISSS
SPAAVSSVPNLLPIPPSSTVDETSLPAPAGESSFALSESTTVETQNLIGLKFKPDVIREF
HESVIKRLFDGFPHLCSICGLRLKLQEQLDRHLEWHALRKPGLDDVDKVSRRWYANSDDW
VAGKAGLPLGLESISCMEDSGKTIDEGEPMVPADDNQCACVMCGELFEDCYNQARGEWMF
KAAVYMMIPSGNGEVGTTNESSAKGPIVHGNCISENSVHDLRVISKVKVEKDA
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagaatccgcgtagaccgtttgatagatcgagagaacacggtctggtgaaa
aaaccgcgattaactgaggatccgactcggccatttactcagagatcagctttagcagct
gcagctccgagatataacagtgcaactagagactctgacgtggaggagcgaggcggtggc
gcgtatcagccacagcaaccgcaccatgagctggtgagccagtacaagaaagccctagct
gagctgactttcaattcgaagccgataataacgaatttgactataattgccggtgagaat
gttcatgctgcgaaagcaatcgcagccaccatctgcgctaacattcttgaggttcccagt
gatcaaaagctgccatcgctgtatctcttagacagtattgtaaagaatatcgcgagcgat
tacataaaatattttgctgccagactacctgaggttttctgcaaggcttataggcaggtt
gatgctgctgtccgttcaagtatgcgacatctttttggaacctggaaaggagtttttcct
cccatgactcttcaaatcattgagaaagaacttggcttcacttctgtggtcaatggctca
tcttcaggagctacaacgtccaggcacgattcacaatcacagcgcccaccgcatagcatt
catgtaaatcccaagtatctggaaaggcagcgtcttcagcagacaagtagggcaaaagga
ttggttaatgacatgaatggggctgtggctagctcaactgtagatgctgagaggccggat
agagcatctagtatgagtgctagcaggccatgggtggatcctacggtcaaaatgcagcat
tctcagagggatgcactaagtgagcctattcatgagaaaaatattggtggagcatatggt
gactatgattatggttctgaactttctcgaagttctggcttgggaagcggaagaaccact
ggaagggttagtgatcaaggatatgagaaaccttggtatggaagtggtagcaatatctca
gagacaatagctggccaaaggaatggttttaataagaagcaaggatttccaaattactca
gcatccaaatctgcaaatgctgctgcgcatctacagcaagttcagagcattccaaaaagt
agcagcagtggcttgtccagctggaaaaattctgaggaagaagagttcatgtgggatatg
catcctagaacatcagatcatgatgcagccaatatttctaagaattcaaggaaagatcat
ttggctgtggatggtcctgagaaattggagttggacaatcacctccgaaagccacaaggc
atacatgatgttagctcaagttttgatatagaaacatcctctgattcactttccaccgaa
cagaaagaccaagctgcttacagacaccagatgccatcgccctggcaattgaaggaggcg
gatgggctgattgctgcgacacttggtgggtttcctgcaagttcgagttcttctctggcc
aggacgggaggtcatccgccagtggggtcatcccatattgggacctcaggttttgggact
ttggcaagttccgcatcagggtctactggatccttagcaacacaaaggtttcaatctgca
ccagctggatcaccatctgggcactcacccatgcaccatcattctccatcaccttcagtt
ccagcacatcatccccgtcaaaacatgcaaaattgtacagaccgggactatccacatgct
cagcctctgtcccgtcctgatttgaaaacatcttcattcccaggacttgtaagcagtggt
cctcgtggccactctactaaagacttgccttctatcctgcatcccaatagccagcttggt
aacttgcacaaagttcaaccccaagacttgaagggttcatctcctgcggtgacttcattt
cagctaaactgccagtctcaaaagcctcttctccctcaagtttctaattttggggcaccc
tcttctaaggaagctgtatctgaccattcgaatcctcttgatgcagaaggtttaggtcaa
tcgggcacaagtagtttgttggcttctgtgttgaagagtggtattcttaatagttcaatc
actgatggcctagctaatcgggctttgagggaagtggggcaaatcccattacagttagat
attcagccccctctaccgagtggtcctcccccttcactgttaacttcttcaggtgccaga
gttgggtcaggatcttcatcaggtccttcccaggaagacccaccagcaacaatgactggt
tctcagagaaaggtagaacaacctcctttgccacctggtccaccaccatcatctcttgct
agtagtacttcaccaaaagtttcgagtgttgaaagtaagacttcgaacccaatttcaaac
ctattgagcaccttagttgcgaagggtctgatatctgcatcaaagactgagccaccatct
cacaccacaccccaggtaaccagtcggatgcagaacgagagccctggcatttcttcgagt
agtcctgcagcagtttcttctgttccaaatttgttacccattccgccatcatccactgtg
gatgagacttctttaccagcacctgctggtgaaagttcttttgccttatcagaatccaca
acagtggaaacacagaatctcataggattgaagttcaagccggatgtaatccgagaattc
catgaatctgtgattaagagactgtttgatggctttccacatttgtgcagcatatgtggc
cttcgccttaaactccaagaacagcttgatagacatttggaatggcatgctttgagaaag
cctggcctagatgatgtagataaggtctcaaggagatggtatgccaactcagatgattgg
gttgctggaaaggcaggtcttcccctgggacttgagtctatcagttgcatggaagattct
ggaaagacgatagatgaaggggagccaatggtgcctgcagatgataatcaatgtgcatgt
gttatgtgtggtgagctatttgaagactgttacaatcaggcaaggggtgaatggatgttc
aaggcagcagtatacatgatgattccatcagggaatggtgaggtaggaacgacaaatgaa
agttctgccaagggtccaattgttcatggaaattgtatatcagagaattcagttcatgac
ttgagagtgatcagtaaagttaaagtggaaaaggatgcataa
DBGET
integrated database retrieval system
