KEGG   Citrus sinensis (Valencia orange): 102612813
Entry
102612813         CDS       T02983                                 
Name
(RefSeq) THO complex subunit 1 isoform X1
  KO
K12878  THO complex subunit 1
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03013  Nucleocytoplasmic transport
cit03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102612813
  09122 Translation
   03013 Nucleocytoplasmic transport
    102612813
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102612813
   03041 Spliceosome [BR:cit03041]
    102612813
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     102612813
Spliceosome [BR:cit03041]
 Complex C
  Other components
   EJC/TREX
    102612813
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102612813
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 102612813
NCBI-ProteinID: XP_006465777
LinkDB
Position
5:join(14476396..14476398,14476489..14476572,14476683..14476757,14477193..14477286,14477638..14477783,14477923..14477994,14479553..14479625,14479734..14479799,14479880..14479926,14480781..14480849,14481003..14481128,14481207..14481272,14481400..14481441,14481823..14481939,14482051..14482133,14482808..14482874,14483427..14483498,14483626..14483676,14486594..14486653,14486739..14486888,14488723..14488986)
AA seq 608 aa
MEVFRRAILHAGPPENFALQTVQEVIKPQKQTKLAQDENQLLENMLRTLLQELVSSAVQS
GEPIMHYGQSIDDGETSQAQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKD
IFGYIESKQDILGKLELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKDPPDGIPVDFNFYKTFWSLQEYFCNPALTLAPTKWQKFTS
SLMVVLNTFDAQPLSDEVGDANVLEEEAATFNIKYLTSSKLMGLELKDPSFRRHVLVQCL
ILFDYLKAPGKNDKDLPSESMKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNW
VWWKRDGCPPFEKQSMEKKAVQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVR
TPAITEYWKPLAEDMDPSAGIEAEYHHKNSRVYCWKGLRFSARQDLDGFSRFTDHGIEGV
VPLELLPPHVRSRYEGKANDRSKRAKKEDSKVAPSQAEENQIAASASENDGEGIRADLEA
SATPVETDVTAGTGNISQSGTATPDEHQKQSSDTDMGQEAGQLDADAEADAGMMDGETDA
EVDLEAVG
NT seq 1827 nt   +upstreamnt  +downstreamnt
atggaagtatttagaagggcaattctacatgccggtcccccggagaatttcgctcttcag
accgtccaagaggtcataaagcctcagaaacaaacaaagttagcgcaagatgagaatcag
ttattggaaaatatgcttcggactttgcttcaggaactagtgtcatctgcagtgcagtcg
ggtgagccgataatgcattatggccaatcaatagatgatggggaaactagccaagctcaa
attccgcgtcttctagacattgtgctgtatctttgtgagaaagaacatgttgagggtggt
atgatatttcagctcctggaagatttgacagaaatgtctacaatgaaaaattgcaaagat
atttttggttatatagaaagtaaacaagacattttaggaaagttagagctgtttgctcgt
ggaaaacttgtgatgttgagaacttgcaatcaacttcttcgtcgtttgtcaaaggcaaat
gatgtagtgttttgcggacgaatcctcatgtttctggctcacttttttccactgtctgag
cgttcagctgtgaacataaagggagtctttaatacgtcaaatgagaccaaatatgaaaaa
gacccacctgatggcattcctgttgatttcaacttctataaaacgttttggagtttacag
gaatacttttgtaaccctgctctgacccttgctccaacaaaatggcagaaattcacatcc
agtttaatggttgtgttgaacacttttgatgctcagcctttgagtgatgaagtgggagat
gcaaatgttttggaggaagaggcagcaactttcaatataaagtatcttaccagcagtaaa
ttaatgggtttagagttgaaagatccgagctttagacgacatgttcttgtgcagtgcctc
atattgtttgattatctaaaggcccctggaaaaaatgacaaagatttgccatctgaaagc
atgaaagaagaaatgaagtcttgtgaagagcgagtaaagaaactgcttgaaatgaccccg
cctaaagggaaggattttcttcatagtattgagcatatattggaacgtgaaaagaattgg
gtgtggtggaaacgtgatggctgtccaccttttgaaaagcaatctatggagaagaaagca
gttcaagatggacctaaaaaacgtaggccaaggtggagacttgggaataaagaactctct
cagttgtggaaatgggcagatcaaaatccgaatgctttgaccgatcctcaacgtgttaga
actcctgccatcactgaatattggaaacctttggctgaagatatggacccatctgcagga
atagaagctgaatatcaccacaaaaacagccgggtttattgctggaaaggtctccgattt
tcagctcgccaggacttggatgggttttctagatttactgaccatggtattgaaggagtt
gtgccactagaacttttgccgcctcatgtccggtccagatacgaaggtaaagcaaatgac
agatccaaacgtgctaaaaaggaagattcaaaggttgctccatctcaagctgaagaaaat
cagattgcagcatctgcgagtgaaaatgatggggaaggtatcagagctgatctcgaagca
tcagcaactccagtggaaactgatgttacagctggaactggcaatatttcccaaagtggt
actgcaacaccagatgaacatcagaagcagagttctgacactgatatgggacaagaggct
ggccaattggatgcagacgcagaagcagatgctgggatgatggatggagagacagatgca
gaagttgatttagaagcagttgggtga

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