KEGG   Citrus sinensis (Valencia orange): 102617679
Entry
102617679         CDS       T02983                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03082  ATP-dependent chromatin remodeling
cit03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    102617679
   03083 Polycomb repressive complex
    102617679
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cit03036]
    102617679
Enzymes [BR:cit01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102617679
Chromosome and associated proteins [BR:cit03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     102617679
   HDAC complexes
    Sin3A-HDAC complex
     102617679
    BRAF-HDAC complex
     102617679
    REST complex
     102617679
    SHIP complex
     102617679
    MiDAC complex
     102617679
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     102617679
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    102617679
  Chromatin remodeling factors
   NuRD complex
    102617679
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 102617679
NCBI-ProteinID: XP_006476865
LinkDB
Position
3:complement(join(3507680..3507740,3507988..3508109,3508219..3508309,3509103..3509245,3509338..3509778,3510564..3511103))
AA seq 465 aa
MEEPTEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRR
MEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFG
FCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHR
RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAGQGKYYALNVPL
NDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLHFL
RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPC
NMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDMERRPKPRIWN
GEDYESDHDEDDRPPHMTNFDDHMMRDGADDMDEEKSDGHPSPRH
NT seq 1398 nt   +upstreamnt  +downstreamnt
atggaggagccaacggagggcgcgtcgcttgtatcaggtcccgatggaaagaagcggcga
gtgagttacttctacgaaccaacaatcggcgattattactacggacaaggtcatccaatg
aagccccacagaatccgcatggcccacaatctcatcgtccactacggtctccaccgtcgg
atggaagtcaaccgtccattcccggcggggccctctgacatccgcaggttccacaccgac
gagtacgtcgagttcctcgcctccgtgtcccccgagtcgtcgggcgacccctcgttttcg
aggcacttgaaacgcttcaatgtcggggaggactgtcccgtgtttgatgggctttttggt
ttctgccaggcctctgctggcggctccattggtgctgctgttaagttgaacagaggtgat
gccgatattgccgtgaattgggctggtggcctccaccatgctaagaagagtgaagcttct
gggttttgttatgtcaatgatattgtccttggcattctcgagttgcttaaagttcacagg
cgtgttttgtatgttgatattgatgttcaccacggagatggcgttgaggaggcattttat
accactgacagagtcatgactgtgtctttccataaatttggggatttctttcctgggaca
gggcatatcagggatgttggggctgggcaggggaagtactatgccctgaatgtacccctg
aatgatggcttagatgatgaaagcttccgtggcctttttcggcccatcatccaaaaagtc
atggaagtgtatcagcctgatgcagttgttctccaatgcggagctgactcgttgtctggt
gataggttgggctgctttaacttgtcggttaaaggccatgcagattgccttcactttctt
agatccttcaatgttcctttgatggttctgggtggtggaggatataccatccggaatgtt
gctcgttgttggtgctacgagacagctgtcgcagttggagtagaacctgataataaattg
ccttacaatgaatactatgagtactttggaccagattatactcttcatgttgaaccatgc
aacatggagaacctaaacgcacacaaagatatggagaagataaggaacacactacttgag
caactgtcgggactaattcatgcccccagtgtaccttttcagacaacaccagccactacc
caagttcccgaagagccggaagaggacatggagcgaagaccaaaacctcgcatctggaat
ggtgaggattatgagtcagaccatgatgaagatgatagacctccacacatgacaaatttt
gatgatcacatgatgagggatggtgcagatgacatggatgaagagaaatcagatgggcat
ccatcacctagacattaa

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