Citrus sinensis (Valencia orange): 102617679
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Entry
102617679 CDS
T02983
Name
(RefSeq) histone deacetylase 6
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03082
ATP-dependent chromatin remodeling
cit03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102617679
03083 Polycomb repressive complex
102617679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cit03036
]
102617679
Enzymes [BR:
cit01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
102617679
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
102617679
HDAC complexes
Sin3A-HDAC complex
102617679
BRAF-HDAC complex
102617679
REST complex
102617679
SHIP complex
102617679
MiDAC complex
102617679
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
102617679
Heterochromatin formation proteins
Other heterochromatin formation proteins
102617679
Chromatin remodeling factors
NuRD complex
102617679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
102617679
NCBI-ProteinID:
XP_006476865
LinkDB
All DBs
Position
3:complement(join(3507680..3507740,3507988..3508109,3508219..3508309,3509103..3509245,3509338..3509778,3510564..3511103))
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AA seq
465 aa
AA seq
DB search
MEEPTEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRR
MEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFG
FCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHR
RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAGQGKYYALNVPL
NDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLHFL
RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPC
NMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDMERRPKPRIWN
GEDYESDHDEDDRPPHMTNFDDHMMRDGADDMDEEKSDGHPSPRH
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggaggagccaacggagggcgcgtcgcttgtatcaggtcccgatggaaagaagcggcga
gtgagttacttctacgaaccaacaatcggcgattattactacggacaaggtcatccaatg
aagccccacagaatccgcatggcccacaatctcatcgtccactacggtctccaccgtcgg
atggaagtcaaccgtccattcccggcggggccctctgacatccgcaggttccacaccgac
gagtacgtcgagttcctcgcctccgtgtcccccgagtcgtcgggcgacccctcgttttcg
aggcacttgaaacgcttcaatgtcggggaggactgtcccgtgtttgatgggctttttggt
ttctgccaggcctctgctggcggctccattggtgctgctgttaagttgaacagaggtgat
gccgatattgccgtgaattgggctggtggcctccaccatgctaagaagagtgaagcttct
gggttttgttatgtcaatgatattgtccttggcattctcgagttgcttaaagttcacagg
cgtgttttgtatgttgatattgatgttcaccacggagatggcgttgaggaggcattttat
accactgacagagtcatgactgtgtctttccataaatttggggatttctttcctgggaca
gggcatatcagggatgttggggctgggcaggggaagtactatgccctgaatgtacccctg
aatgatggcttagatgatgaaagcttccgtggcctttttcggcccatcatccaaaaagtc
atggaagtgtatcagcctgatgcagttgttctccaatgcggagctgactcgttgtctggt
gataggttgggctgctttaacttgtcggttaaaggccatgcagattgccttcactttctt
agatccttcaatgttcctttgatggttctgggtggtggaggatataccatccggaatgtt
gctcgttgttggtgctacgagacagctgtcgcagttggagtagaacctgataataaattg
ccttacaatgaatactatgagtactttggaccagattatactcttcatgttgaaccatgc
aacatggagaacctaaacgcacacaaagatatggagaagataaggaacacactacttgag
caactgtcgggactaattcatgcccccagtgtaccttttcagacaacaccagccactacc
caagttcccgaagagccggaagaggacatggagcgaagaccaaaacctcgcatctggaat
ggtgaggattatgagtcagaccatgatgaagatgatagacctccacacatgacaaatttt
gatgatcacatgatgagggatggtgcagatgacatggatgaagagaaatcagatgggcat
ccatcacctagacattaa
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integrated database retrieval system