Entry |
|
Name |
(RefSeq) regulator of nonsense transcripts UPF3-like
|
KO |
K14328 | regulator of nonsense transcripts 3 |
|
Organism |
cit Citrus sinensis (Valencia orange)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:cit00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102625038
03015 mRNA surveillance pathway
102625038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cit03019]
102625038
Messenger RNA biogenesis [BR:cit03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102625038
mRNA cycle factors
P-body specific factors
102625038
|
SSDB |
|
Motif |
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Other DBs |
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LinkDB |
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Position |
5:join(4106982..4107121,4107810..4107916,4108206..4108301,4108418..4108516,4108657..4108736,4109263..4109376,4110242..4110386,4111290..4111363,4112138..4112570,4112841..4112939,4113089..4113207,4113311..4113349)
|
AA seq |
514 aa
MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF
KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE
FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG
KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD
FDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVKT
IISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQL
VMKDTNGVSDDKVIVNDLHSEKQERRTRNKDRPDRAAWTLRRSDGSYQSDESLSSSASQL
SLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGPTHVKDDG
SPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS |
NT seq |
1545 nt +upstreamnt +downstreamnt
atgaaggggccgttggatcgaaccaaggtggtggtgcgaaacttgccgccggcaattacg
cagccggcgtttacggaacaaatcgacggtgccttcggtgggcgctacaattgggtgtcc
tttcgtcaaggaaagaccagtcagaagcatcagtcctgtgctagagcctaccttgacttc
aagaagccagaagacgttctggaattcgctgaattctttaacggacatgtctttgttaac
gagaagggtgtccagtttaaaactattgttgagtacgctccctcacaacgcgttccaaag
caatggtctaaaaaggacggtcgtgaagggaccttattaaaggatcctgagtatttggag
tttcttgaatttatttcaaagccggttgagaatcttcctagtgcagagatacaactggag
agaagagaagcagaaagagctggtgctgctaaagaagcgcttatagttacacctttaatg
gattttgtacgacagaaaagggctgcaaaggccgggcctcggaggttattgtctaatggg
aaactgagtagaagagctagtggatcatcaaccggaagtcctgcttcaggctcgtccaaa
cgaggttctgacaagaaaaaggcttccaccacaatgtatgttttaagggacactgcaaaa
aacagtagtgggaaagacaagtctacttatattctggttcccaagcgagatgatcaggat
tttgataagcctgttagttcatcatcagcaactggaagtgaagtagttttggaggaaagt
ggagttcctgctaatagtgatggtgggaaaaagaaagtgctgcttcttaaagggaaagaa
cgagaaatttcccaggtgtctggcagtgtgtcacatcagcagagtgcttcagttaaaacc
ataatcagttcacctgctctgaagcagaaccagcgacgtgaaaacagcgggagaataatt
agaggcatacttttgaataaggacgctcgtcaaaatcaggcttctggacttcattctgag
cagcaaatatcaaatctagaaaaggacaaacgacctcctcggccatcgcatgtacagttg
gttatgaaggacacaaatggggtttctgatgacaaggttattgtgaatgacttgcacagt
gagaagcaggaaagacgcaccagaaacaaggatagacctgatcgtgccgcgtggacactt
cgacgttcagatggatcgtatcaaagtgatgagtctttgtcatcatctgcatctcaactt
tcactgtcagcagtggattcttcagaagggaatcttggcgatgggaaatttgacttatca
aatatgaggagtggagaagttaaagctgttgggggtggacgtagcagtcattcttctgta
gacaatggatcccatagacatattggtcgtcgagggccaacccatgttaaggatgacggt
tcgcctgttatgagtgagggaaagcctttaagaagaggtggtgcttctggatatggttcc
catgagaaacaagtctgggttcagaagtcaagctcaggttcttag |