KEGG   Citrus sinensis (Valencia orange): 102625038
Entry
102625038         CDS       T02983                                 
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
  KO
K14328  regulator of nonsense transcripts 3
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03013  Nucleocytoplasmic transport
cit03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102625038
   03015 mRNA surveillance pathway
    102625038
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102625038
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     102625038
   mRNA cycle factors
    P-body specific factors
     102625038
SSDB
Motif
Pfam: Smg4_UPF3 RRM_2
Other DBs
NCBI-GeneID: 102625038
NCBI-ProteinID: XP_006492554
LinkDB
Position
5:join(4106982..4107121,4107810..4107916,4108206..4108301,4108418..4108516,4108657..4108736,4109263..4109376,4110242..4110386,4111290..4111363,4112138..4112570,4112841..4112939,4113089..4113207,4113311..4113349)
AA seq 514 aa
MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF
KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE
FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG
KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD
FDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVKT
IISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQL
VMKDTNGVSDDKVIVNDLHSEKQERRTRNKDRPDRAAWTLRRSDGSYQSDESLSSSASQL
SLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGPTHVKDDG
SPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS
NT seq 1545 nt   +upstreamnt  +downstreamnt
atgaaggggccgttggatcgaaccaaggtggtggtgcgaaacttgccgccggcaattacg
cagccggcgtttacggaacaaatcgacggtgccttcggtgggcgctacaattgggtgtcc
tttcgtcaaggaaagaccagtcagaagcatcagtcctgtgctagagcctaccttgacttc
aagaagccagaagacgttctggaattcgctgaattctttaacggacatgtctttgttaac
gagaagggtgtccagtttaaaactattgttgagtacgctccctcacaacgcgttccaaag
caatggtctaaaaaggacggtcgtgaagggaccttattaaaggatcctgagtatttggag
tttcttgaatttatttcaaagccggttgagaatcttcctagtgcagagatacaactggag
agaagagaagcagaaagagctggtgctgctaaagaagcgcttatagttacacctttaatg
gattttgtacgacagaaaagggctgcaaaggccgggcctcggaggttattgtctaatggg
aaactgagtagaagagctagtggatcatcaaccggaagtcctgcttcaggctcgtccaaa
cgaggttctgacaagaaaaaggcttccaccacaatgtatgttttaagggacactgcaaaa
aacagtagtgggaaagacaagtctacttatattctggttcccaagcgagatgatcaggat
tttgataagcctgttagttcatcatcagcaactggaagtgaagtagttttggaggaaagt
ggagttcctgctaatagtgatggtgggaaaaagaaagtgctgcttcttaaagggaaagaa
cgagaaatttcccaggtgtctggcagtgtgtcacatcagcagagtgcttcagttaaaacc
ataatcagttcacctgctctgaagcagaaccagcgacgtgaaaacagcgggagaataatt
agaggcatacttttgaataaggacgctcgtcaaaatcaggcttctggacttcattctgag
cagcaaatatcaaatctagaaaaggacaaacgacctcctcggccatcgcatgtacagttg
gttatgaaggacacaaatggggtttctgatgacaaggttattgtgaatgacttgcacagt
gagaagcaggaaagacgcaccagaaacaaggatagacctgatcgtgccgcgtggacactt
cgacgttcagatggatcgtatcaaagtgatgagtctttgtcatcatctgcatctcaactt
tcactgtcagcagtggattcttcagaagggaatcttggcgatgggaaatttgacttatca
aatatgaggagtggagaagttaaagctgttgggggtggacgtagcagtcattcttctgta
gacaatggatcccatagacatattggtcgtcgagggccaacccatgttaaggatgacggt
tcgcctgttatgagtgagggaaagcctttaagaagaggtggtgcttctggatatggttcc
catgagaaacaagtctgggttcagaagtcaagctcaggttcttag

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