Citrus sinensis (Valencia orange): 102631201
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Entry
102631201 CDS
T02983
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X3
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102631201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102631201
03019 Messenger RNA biogenesis [BR:
cit03019
]
102631201
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102631201
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102631201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Ribonuc_2-5A
Motif
Other DBs
NCBI-GeneID:
102631201
NCBI-ProteinID:
XP_006467996
LinkDB
All DBs
Position
2:join(28695019..28695363,28695808..28695909,28696027..28696281,28698062..28698748,28699047..28699991,28700127..28700675,28701556..28701600)
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AA seq
975 aa
AA seq
DB search
MESGKILQNPRPSPSPSLAFTNNNKAMPNELAQKPSTPIIDKFRALLKLREAEARVGDGA
GTTLSTNEIVQLYETVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICTRILEAPVNH
KLPSLYLLDSIVKNINKEYVRYFSSRLPEVFCEAYRQVHPDLYSAMQHLFGTWSTVFPQA
VLRKIEAELQFSSQVNKQSSNVNSLRASESPRPTHGIHVNPKYIRQFEHSNTDSVGGQRS
NPAGSVGRATFALGANKLHPSSTSRLGRSLSPLAIGSEGDEFAVENSPRRLEGTSPSHPV
FDYGIGRAIGRNEEVSEWRNPNRFESTSTSYNLSNGHEHQGPRALIDAYGSDRRASNNKP
PQVGHMGINGMGNKVASRSWQNTEEEEFDWEDMSPTLLDRGRKNDFLPSSVPLYGSTGAR
PDFSKLNASSLESDVRTNHSSQAQLPLLDDSSVTAEDSVSLLGSGRGTGKVSGFQSEPNQ
NLGSRYPQESWNLPHHFSRSSHPPNGRGRGKDSHIPFPGSGVPSLGVDKAAPYIDKFVGA
DAQFVRPPAVVSRIGSSGPDLLSTGAIQSSTGAWAPMNLHKPHLPPGQPVYPQQKQTRTQ
FDSINAAGRILNQGPSKSLYNPESKELSLMKPQLHDQHATPNQQNQGRAQFLSQEATNNF
LPSIAASMPPHLLAPPLSHGYTQRGHNAVMGMVSSNPVPAGQQPLHVQSIQNSSLHLQGR
PAPPLPPGPPPASSQMIPGSQSAGLVVPSQQPGHAFSGLISSLMAQGLISLTTQTPVQDS
VGLEFNADLHKLRHESAISSLYANLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRK
QKPSRKWFVSASMWLSGTEALGTDAIPGFLPAEPIVEKKDDEEMAVPADEDQNVCALCGE
PFDDFYSDETEEWMYKGAIYMNAPNGSTEGMDRSQLGPIVHAKCRSESTVIPSDDFKRDE
GGSSEEGNQRKKLRS
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggaatctgggaaaatcttacaaaaccctagaccttcgccttcaccttcacttgcattc
actaataacaacaaggcgatgccaaatgagctggcgcagaagccgtcaacgccgataatt
gacaagtttcgggcgcttctgaagctacgagaggcggaggctagggttggggatggtgcc
gggacgacgcttagtacgaatgagattgtgcagctatacgagacggtgttggctgagctc
actttcaattcgaagccgattattactgatctgactataattgccggagaacagagagcc
cacggcgatggcattgccgaagcaatttgcaccaggattctcgaggccccagttaatcac
aaactgccgtcgttgtatcttttggacagtatagttaagaacatcaataaagaatatgtt
aggtacttttcttcccgtttacctgaggttttttgtgaggcatacaggcaagttcatcct
gacttgtatagtgctatgcaacacctctttggcacttggtcaacagtttttccacaagca
gtcctccgcaagattgaggcggaactacagttttcttctcaagtaaataaacaatcatca
aatgttaattctctgcgagcgtctgagtctcctcgaccaactcatggcatacatgttaat
cctaaatacatacgtcagtttgaacattcaaacacagatagtgttggaggtcaaagatcg
aatccagcaggtagtgtcggtcgtgcgacttttgctcttggtgctaataagctgcatcca
tcttcaacttccagacttggaagatctttgtcgcctttagcaattggatcagaaggtgat
gagtttgcagtggaaaattcacctagaaggcttgaggggacctctccatctcatccagta
tttgattatggaataggcagagcaattggcagaaatgaggaggtgagtgaatggcgtaac
cccaatagattcgaatctacttctacttcttataatcttagcaatggacatgagcatcaa
ggacctagagctttgatagacgcatatggaagtgacagaagagcttctaacaacaaacct
ccgcaagttggacacatgggtataaatggaatgggcaataaggtagcatcgagatcatgg
cagaatactgaagaggaggagtttgattgggaagatatgagccctactttactagaccgt
ggcaggaaaaatgactttttgccatcatctgttccactatatggatcaactggggcaagg
cctgacttcagcaagttgaatgcttcctcgttggagtctgatgttaggaccaatcattct
agtcaggcacagctacctctgttggatgattcttctgtaactgctgaagattcagtttct
ttgctgggttctggtcgcggaacaggtaaagtatctgggtttcaatctgagccaaatcaa
aatctaggttctcgttatcctcaggaaagctggaatttgccacatcacttctctcgatca
tcacaccctcctaatggcaggggacgagggaaagattcccatattccctttccgggcagt
ggtgtaccttccttgggtgttgataaagcggctccttatattgacaagtttgtgggtgct
gatgcacaatttgttaggcctccagcagttgtgtctagaataggttcttctggtcctgac
ttgcttagtactggggctatacagtcatcaactggggcttgggccccaatgaacttgcat
aaacctcacctgcctcctggacaacctgtttatccacagcaaaagcagacaaggactcag
tttgattcaataaatgctgctggtcgcattttgaatcagggaccaagtaaatcattgtat
aatcccgaaagcaaggaactgagtttgatgaagccacaactgcacgatcaacatgctact
ccaaatcaacaaaaccagggccgggcacaatttctttctcaggaggctacaaataatttt
ctcccctccattgcagcatcgatgccacctcacctactggcaccacccttgagtcatggt
tacacccaacgagggcacaatgccgtcatgggtatggtttcatcaaatccagtgcctgct
ggacaacaacctttacatgtccagagtattcagaatagctccttgcatttacaggggagg
ccggcgccaccacttcctcctggtccccctcctgcttcttctcaaatgatacctgggtct
caaagtgcagggctagttgtccccagtcaacaaccaggccatgcattttctggtttgatt
agttccctcatggcacaaggtttgatctcattaacaacgcaaacccctgtgcaggattct
gtgggacttgagttcaatgccgatcttcataagttgcgccatgagtcggcaataagttcc
ctatatgctaatcttccacgacagtgcaccacatgtggactacgttttaagtgtcaagaa
gagcacagcagtcatatggattggcatgtgactaagaaccggatgtctaagaaccgtaag
cagaagccttctcgtaaatggtttgtaagtgctagcatgtggcttagtggtacagaagca
ttgggaactgatgcaattcctgggtttttacctgctgagcccattgtggaaaagaaagat
gatgaagaaatggctgtccctgctgatgaagaccagaatgtatgcgcattatgtggagaa
ccctttgatgatttttacagtgatgagaccgaggaatggatgtataaaggagctatctac
atgaatgcaccaaatgggtcaacagaaggcatggatagatctcagttaggtcctatagtg
catgctaaatgcaggtctgagtctactgtgattccctctgacgattttaaacgtgatgaa
gggggaagtagtgaagagggtaatcaaagaaaaaaattgcggagttaa
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