Clostridium innocuum: G4D55_10655
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Entry
G4D55_10655 CDS
T06525
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ciu
Clostridium innocuum
Pathway
ciu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ciu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G4D55_10655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ciu03400
]
G4D55_10655
Enzymes [BR:
ciu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G4D55_10655
DNA repair and recombination proteins [BR:
ciu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G4D55_10655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QIX09506
LinkDB
All DBs
Position
complement(2209876..2210808)
Genome browser
AA seq
310 aa
AA seq
DB search
MDFAARDASPMLIGLEQPAFDDEDYIYEWKLDGVRCLLYLDKDNTELRNKRNLKLNAKFP
ELTQLHKQVKTRCILDGELYIFHDGEPDFFQVQKRTLTSDPFKIRLHSRQFPASFTAFDI
LYHKDAFVIDQPLMKRKQLLEKTVRENDRLSISRYIETNGIALFELTKQRGLEGIVAKRK
DSRYVCGKRTKDWIKCKNLMDDDFIVCGYIVKEKGIVSLILAQYDQHHQVVYKGHVTMGA
SLPYLMEHSEKTDTSFLTTIPEGNEDAVWIDPPLVGTVKFMQYTEQGGLRQPVFKGFRED
KAITDCRSKQ
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggactttgctgccagagatgcttccccgatgctcatcgggctggagcagccggccttc
gatgatgaggattacatctatgaatggaagctggacggtgtacgctgtctattgtatctt
gacaaagacaacaccgagttgagaaacaaacgcaatctgaagctgaatgcaaagtttcct
gagctgacacagctgcataagcaggtaaaaacacgctgcatactggatggtgagctgtat
atttttcatgatggagagcccgatttctttcaggtacagaagcggactttaacctcggac
ccctttaaaatccgtttgcattcccgccagttccctgccagcttcactgcctttgacatc
ctctatcataaggatgcattcgtcattgatcagccgctcatgaaacgcaaacagctgctg
gaaaagacagttcgggaaaatgatcggctttcaatctcccgctatatcgaaaccaacggt
attgcgctgtttgagctgacaaagcagcggggtcttgagggaatcgtcgccaaacgcaaa
gacagccgctatgtgtgtggaaagcgcacgaaggactggatcaaatgcaagaatcttatg
gatgatgattttatcgtctgtggctatattgtcaaggagaaaggcattgtatctcttatt
ctggcacagtatgaccagcaccatcaggtggtatacaaaggacatgtgaccatgggggca
tctcttccctatctgatggagcacagtgagaaaaccgacaccagctttctgacaacgatc
cctgagggaaatgaagatgccgtatggattgatccgccactggtaggaacggtaaaattc
atgcagtatacagaacagggcggcttgcggcagccggtattcaagggctttcgtgaagat
aaagcgattacggactgtcgaagtaagcagtag
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