Cruoricaptor ignavus: IMZ16_07410
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Entry
IMZ16_07410 CDS
T06873
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
civ
Cruoricaptor ignavus
Pathway
civ03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
civ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IMZ16_07410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
civ03400
]
IMZ16_07410 (mfd)
Enzymes [BR:
civ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMZ16_07410 (mfd)
DNA repair and recombination proteins [BR:
civ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IMZ16_07410 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QOR73356
UniProt:
A0A7M1T0I9
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All DBs
Position
1525720..1529148
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AA seq
1142 aa
AA seq
DB search
MELKSIRESFLPAMLQRNFGRAIFENLEENQHTKVKGAAGSAPSLFAAELFLALRQNILF
VLDDKEDAHYATAELEELLGEKSVLYFPETNREPYHIEKTQNANIVLRTEVLNRITNDNN
PRIIVANAAALSEKVLKKEDFKAISHTIKTGDQLDFDFTEELLTQFDFEVTDFVSQPGEF
SVRGGIVDVFSYSNEKPYRISFFGNEVESIREFDIETQLSTQNIDSFELISNMNYAVTGS
KVSLLEILQKETLIITKNLFLIQKKLTQIFEKAEENFAKLSEAIQHEKPQELFVSSDDFI
KNFSQFKTIDFTSESTEGKVDHQSISSNLIQLSQSPMPVFNKNFEMLAEDLIQKKKDGYE
VWISYSNEKQQERLDAILKAEREKVEVEFEASGNVDEWKSWREIKSEDFHEGFIDSEEKI
AVYTDHQIFGRYQRFKAKNSFAKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKLNND
GRVQESFKLVYKNGDLLYVSIHSLHKISKYNAPEGKEVVLSKLGSPAWKSLKQKTKNKVK
EIAFDLIKLYAKRKTAKGFAFSPDTYLQDELEASFIYEDTPDQEKATHDVKRDMEAETVM
DRLVCGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYRSFSERLAEFPVNIAY
LNRFRTAKQRTEILKDLEEGKLDIIIGTHQLVSDKVIFKDLGLLIIDEEHKFGVAVKDKL
KTLKADVDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQVIGFDEETIRDAV
SYEIQRGGQVYFINNRIENLQEIAGLIQRLVPDARIITGHGQMEGKKLEQNVLDFMAGNY
DVLVSTTIVESGVDVPNANTIFINDAQKFGMADLHQMRGRVGRSNRKAFCYLITPPYDLI
STEARKRLEAVEQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFETYQKIMQEA
LEELRYDEEFQGVFDNEQERKKLFRSVKDVNIDTDFELMLPSDFVQSTEERLLLYQKLAE
ITDKFTLSRFENELMDRFGKLPEEAQNLLKSVELKWLAAEIGFEKVVMKNGVFLGYFPEN
PQDKYYQSERFQKILRHITQNPEGITIKEKNNQLLLRKESVRSLQQIMPVMEKLVEKLSD
EG
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaaaagtatcagagaaagttttttgcctgctatgctgcagcggaatttcggc
agggcaatttttgaaaatttagaggaaaaccagcatacaaaggtgaaaggtgccgccggt
tctgcaccttcgcttttcgccgcagagttgttcctggcgctgcggcagaacatccttttc
gtgctcgatgacaaggaagatgcgcactatgccacggcagaactggaagaattgctcggc
gaaaagagcgtgctctacttcccggaaaccaaccgcgaaccgtaccatatcgagaaaact
caaaatgcgaatatcgtattaagaacggaagttttaaacagaatcactaatgataataat
ccgagaatcatcgtggcaaatgctgcggcgcttagcgaaaaagtgctgaaaaaggaagat
ttcaaagcgatttctcacacaataaaaaccggcgaccaacttgatttcgatttcactgaa
gaattgctcacacagtttgatttcgaggtgacggatttcgtttcccaacctggcgaattc
agcgttcgtggaggaattgtggatgtgttttcctactcgaacgaaaaaccataccgcatt
tcttttttcggaaatgaggtggaaagcattcgggaatttgacatcgaaacccaactttcc
acgcagaatatcgattcgtttgaacttatctcaaatatgaattacgcggtcactggaagt
aaggtttcgcttttagagattttgcagaaagagacgctgattattacgaaaaacttattt
ctgattcagaagaaattaacgcagatttttgagaaagcggaagagaattttgcaaaactc
agcgaggctattcagcacgaaaaaccgcaggagcttttcgtaagttctgatgattttatc
aaaaatttttctcagtttaaaactatcgattttacttcggaaagtacagaaggaaaggtt
gatcatcaatcgattagctcaaatttaattcagctttctcaatcgccgatgccggttttt
aacaagaattttgagatgttggctgaagatctgatccagaagaaaaaagacggctacgaa
gtctggatttcctattccaacgagaagcagcaggaaaggctggatgcaattttgaaagcg
gagcgggagaaggttgaggttgagtttgaggcttcaggaaatgttgacgaatggaaaagc
tggcgggaaattaaaagtgaggatttccacgagggcttcatcgattccgaagagaaaatc
gcggtttatacggaccaccagattttcgggcgctaccaaagattcaaggcgaaaaattct
ttcgcaaaatcggaacagctcacgctgaaagacctgatgtccctgaaagtaggcgattac
attgcccacattgatcacggcatcgggaaatttatgggcctggtgaagctgaacaacgat
ggcagggtgcaggaaagttttaaactcgtttacaaaaacggcgatctgctgtatgtttcc
atccactcgctgcacaaaatttccaagtacaatgcgccagaaggcaaggaggttgtgctc
tcgaaactcggttcgccggcttggaaatcattaaagcaaaaaacgaaaaacaaggtaaag
gaaatagccttcgacctgataaagctctacgcaaaacgcaagacagcaaaaggcttcgca
ttctcgccggacacctacctgcaggacgagctggaggccagcttcatctacgaagacacg
cccgatcaggaaaaggcaacgcacgatgtgaagcgcgatatggaagcggaaaccgtgatg
gataggctagtttgcggcgatgtaggcttcgggaaaacggaagtagcaatacgggcggct
ttcaaagcggcaacggacggaaagcaggtcgcagtgctggtgcccaccacaatcctggcg
tttcagcattaccgaagtttcagcgaaaggctggcggaatttcccgtgaacatcgcctat
ctgaacagattccgcaccgcaaaacagcgcacggaaatcctgaaagatttggaagaagga
aagctggacatcatcatcggaacgcaccagctggtttcggacaaggtgatattcaaggac
ttaggcctgctcatcatcgatgaagaacataaattcggcgtggcagtgaaagataaacta
aaaaccctgaaagccgatgtggatacgctgacgctgacggcaacgccgatacccagaacg
ctgcagttttcactgatggcagcacgggatttatccgtaataaaaacaccgccgccaaac
cgacaacctgttgaaacacaagtgattggctttgatgaggaaaccattcgtgatgcggtt
tcgtacgaaattcagcgtggcggccaggtgtacttcatcaacaatagaattgaaaacctg
caggaaatagccggactgatacaaaggctggtgcccgatgcaagaatcatcacagggcac
ggacaaatggagggcaagaagctggagcagaatgtgctggattttatggcgggaaattac
gatgtgctagtttctaccacaattgtagaaagcggcgtggatgtgccgaatgcgaacacg
atattcatcaatgatgcgcagaaattcggaatggcagacctgcatcaaatgcgcggaagg
gtagggcgcagcaaccgtaaggccttctgctacctgataacgccgccgtacgatttgatt
tctaccgaagcgcggaaaaggctggaagccgtggagcaattttcggatttgggcagcggt
tttcagattgcgatgaaagatttggaaatccgtggtgccggcgatttattgggcggagaa
cagagcggcttcatcaatgagatgggctttgaaacttaccaaaaaataatgcaggaagcg
ctggaagaactgcggtacgacgaagaatttcagggcgttttcgataatgagcaggagcgg
aaaaagcttttccgcagcgtgaaggatgtgaacatcgatacggattttgagctgatgctg
ccaagcgattttgtgcaaagcacggaagaacggctgctgctttaccaaaagctggcggag
attaccgataaattcaccctgagccgctttgaaaatgaactaatggaccgcttcggaaaa
ttgccggaggaagcgcagaacctgctgaaatccgtggagctgaaatggcttgccgcggag
attggttttgaaaaagtggtgatgaagaacggcgttttcctgggctacttccctgaaaat
ccgcaggataagtattaccaaagcgaaagattccaaaagatactgcggcacattacacaa
aatccggagggcattacgataaaagaaaagaacaatcaactgctgctccgcaaagaaagc
gtgcgcagccttcagcagataatgcctgtaatggaaaaactggtggagaagttgagtgat
gaagggtga
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