Callithrix jacchus (white-tufted-ear marmoset): 100388434
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Entry
100388434 CDS
T03264
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03013
Nucleocytoplasmic transport
cjc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100388434 (UPF1)
03015 mRNA surveillance pathway
100388434 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100388434 (UPF1)
Enzymes [BR:
cjc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100388434 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100388434 (UPF1)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100388434 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100388434 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100388434
NCBI-ProteinID:
XP_017823020
Ensembl:
ENSCJAG00000019627
UniProt:
F7HDF7
LinkDB
All DBs
Position
22:17185396..17221225
Genome browser
AA seq
1129 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
SSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
TPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagaccctcactttcctggacacggaggag
gccgagctgctcggcgccgacactcagggctccgagttcgagttcaccgacttcactctt
cctagccagacgcagacgccccccggcggccctggcggcccgggcggtggcggcgctgga
ggcccgggcggcgcgggcgcgggcgctgcggcgggacagctcgacgcgcaggttggaccc
gaaggcatcctgcagaatggggctgtggacgacagtgtagccaagaccagccagttgttg
gccgagttgaacttcgaggaagatgaagaagacacctattacacgaaggacctccccata
cacgcctgcagttactgtggaatacacgatcctgcctgcgtggtttactgtaataccagc
aagaagtggttctgcaacggccgtgggaatacctctggcagccacattgtaaatcacctt
gtgagggcaaaatgcaaagaagtgaccctgcacaaggacgggcccctgggggagacagtc
ctggagtgctacaactgcggctgtcgcaacgtcttcctcctcggcttcatcccagccaaa
gccgactcagtggttgtgctgctctgcaggcagccctgtgccagccagagcagcctcaaa
gacatcaactgggacagctcacagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtcaagatcccctccgagcaggagcagctgcgggcgcgccagatcacagcgcag
cagatcaacaagctggaggagctctggaaggaaaatccttctgccaccttggaggacctg
gagaagccgggggtggacgaggagccacagcacgtcctcctgcggtacgaggatgcctac
caataccagaacatattcgggcccctggtcaagctggaggccgattatgacaagaagctg
aaggaatcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagatatgcggctcatgcagggggatgagatatgcctgcggtacaaaggggac
cttgcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggcgat
gagatcgccattgagctgcggagcagcgtgggtgcacccgtggaggtgactcacaatttc
caggtggattttgtgtggaagtcgacctcctttgacagaatgcagagtgcgttgaaaaca
tttgctgtggacgagacctcggtgtccggctacatctaccacaagctgctgggccacgag
gtggaagacgtgatcatcaagtgccagctgcccaagcgcttcacggcacagggcctccct
gacctcaaccactcccaggtttatgccgtgaagactgtgctgcagagaccgctgagcctg
atccagggcccgccaggcacagggaagacagtgacatcagccaccatagtctaccacctg
gcccggcaaggcaacgggccagtgctggtatgtgctcccagcaacattgctgtggaccag
ctgacggagaagatccaccagacggggctgaaagtcgtgcgcctctgtgccaagagccgc
gaggccatcgactccccggtgtccttcctggccctgcacaaccagatcaggaacatggac
agcatgcctgagctgcagaagctgcagcagctgaaagacgagaccggggagctgtcatcc
gccgacgagaagcgataccgggccctgaagcgcactgcagagagagagctgctgatgaac
gcagatgtcatctgctgcacatgtgtgggtgccggcgacccgaggttggccaagatgcag
ttccgctccattttaatcgacgaaagcacccaggccaccgagcccgagtgcatggttcct
gtggtccttggggctaagcagctgattctcgtgggtgaccactgccagctgggcccagtg
gtgatgtgcaagaaggcggccaaggctgggctgtcacagtcgcttttcgagcgcctcgtg
gtactgggcatccggcccatccgcctgcaggtccagtaccggatgcaccctgcactcagc
gccttcccatccaacatattctacgagggctccctccagaatggtgtcactgcagcggat
cgtgtgaagaagggatttgacttccagtggccccaacctgataaaccgatgttcttctac
gtgacccagggccaagaggagattgccagctcgggcacttcctacctgaacaggaccgag
gctgcgaatgtggagaagatcaccacgaagctattgaaggcgggcgccaagccggaccag
atcggcatcatcacgccttacgagggccagcgctcctacctggtgcagtacatgcagttc
agtggctccctgcacaccaagctctaccaggaggtggagatcgccagtgtggacgccttt
cagggacgcgagaaggacttcatcatcctctcctgtgttcgggccaacgagcaccaaggc
attgggtttttaaatgaccccagacgtctgaacgtggccctgaccagagcaaggtatggc
gtcatcattgtgggcaacccaaaggcgctgtcaaagcagccgctctggaaccacttgctg
aactactacaaggagcagaaggtgctggtggaggggccgctcaacaacctgcgcgagagc
ctcatgcagttcagcaagccacgcaagctggtcaacaccatcaacccgggggcccgcttc
atgaccacagccatgtatgatgcccgggaggccatcatccccggctccgtctatgatcgg
agcagccagggccggccctctagcatgtacttccagacccacgaccagatcggcatgatc
agtgctggccccagccacgtggccgccatgaacattcccatccccttcaacctggtcatg
ccgcccatgccgccacctggctatttcggacaagccaacgggccagctgcaggccgaggc
accccgaaaggcaagactggtcgtgggggacgccagaagaaccgctttgggcttcctggg
cccagccagaccaacctccccaacagtcaagccagccaggatgtggcgtcacagcccttc
tcgcagggcgccctgacacagggctacatctccatgagccagccctcccagatgagccag
cccggcctgtcccagccggagctgtcccaggacagttaccttggcgacgagtttaaatca
cagattgacgtggcgctctcacaggactccacataccagggagagcgggcttaccagcat
ggcggggtgacgggactatcccagtattag
DBGET
integrated database retrieval system
