Callithrix jacchus (white-tufted-ear marmoset): 100389973
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Entry
100389973 CDS
T03264
Symbol
SCN10A
Name
(RefSeq) sodium channel protein type 10 subunit alpha isoform X1
KO
K04842
voltage-gated sodium channel type X alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cjc04040
]
100389973 (SCN10A)
Ion channels [BR:
cjc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100389973 (SCN10A)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
Na_trans_cytopl
CcmD_alt
GPHH
Motif
Other DBs
NCBI-GeneID:
100389973
NCBI-ProteinID:
XP_035134082
Ensembl:
ENSCJAG00000031394
LinkDB
All DBs
Position
17:complement(69631014..69741327)
Genome browser
AA seq
1961 aa
AA seq
DB search
MELPIGSLETNNFRRFTPESLVEIEKQIAAQQAAKKTREKHREQKDQEEKLRPQLDLKAC
NQLPKFYGELPAELIGEPLEDLDTFYSTHRTFMVLNKGRTISRFSATRALWLFSPFNLIR
RTAIKVSVHSYPLWFSLFITVTILVNCVCMTQTELPEKIEYVFTAIYTFEASIKILARGF
CLNEFTYLRDPWNWLDFSVITLAYVGTAIDLRGISGLRTFRVLRALKTVSVIPGLKVIVG
ALIHSVKKLADVTILTIFCLSVFALVGLQLFKGNLKNKCVKNAMAVNETTNYSSHGKCFL
FFLSLPDIFINKRGTSDPLLCGNGSDSGHCPDGYICLKTFDNPDFNYTSFDSFAWAFLSL
FRLMTQDSWERLYQQTLRASGKIYMIFFVLVIFLGSFYLVNLILAVVTMAYEEQNQATID
EIEAKEKKFQETLEMLRKEQEVLAALGIDTTSLHSHNGSPLTSKNASERRHRIKPRVSEG
STEGNKSPHSDPYNQRRMSFLGLASGRRRASHGSVFHFRFPGRDISLPEGVTDDGAFPGD
RESYRGSLLLGGGAGQQGPLPRSPQPSNPDSMHGEDEHPPLAPGAVEVSAFDAGQKKTFL
SAEYLDEPFRAQRAMSVVSIITSVLEELEESEQRCPPCLTSLAQKYLIWDCCPTWLKLKT
ILFGLVTDPFAELTITLCIVVNTVFMAMEYHGMSSTFEAMLYIGNIVFTVVFTAEMVFKI
IAFDPYYYFQKKWNIFDCIIVTVSLLELGVARKGSLSVLRSFRLLRVFKLAKSWPTLNTL
IKIIGNSVGALGNLTIILAIIVFVFALVGKQLLGENYRSKRKTISAPHEEWPRWHMCDFF
HSFLIVFRILCGEWIENMWACMEVGQKSICLVLFLTVMVLGNLVVLNLFIALLLNSFSAD
NLTASEDDGEVNNLQVALARIQVFGRQTKQALCNFFSRPCPLPWLKAEPELVVKLPLSSS
KAENHIAANAAGGSSGRLPAPRGPRDEHSDFVANPTVWVSVPIAEGESDLDDLEDDGEEY
ARCSQQEVIPEGQQELLQQVERCEDLLTPRSPRSGTSSEDLAPYLGETWRNKAVPQAPAE
GVDDTSSSEGSTVDCPDPEEILRKIPELADDLEEPEDCFTEGCIRRCPCCKVDATSSPWD
VGWQVRKTCYRIVEHSWFESFIIFMILLSSGSLAFEDYYLDQKPTVKALLEYTDRVFTFI
FVFEMLLKWVAYGFKKYFTNAWCWLDFLIVNISLTSLTAKILEYSEVAPIKALRTLRALR
PLRALSRFEGMRVVVDALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFWRCINYTDG
EFSLVPLSIVNNKTECEIQNSTRSFFWVNVKVNFDNVAMGYLALLQVATFKGWMDIMYAA
VDSREVNMQPKWEDNVYMYLYFVIFIIFGGFFTLNLFVGVIIDNFNQQKKKLGGQDIFMT
EEQKKYYNAMKKLGSKKPQKPIPRPLNKFQGFVFDIVTRQAFDVTIMVLICLNMITMMVE
TDEQSEEKTKILGKINQFFVAVFTGECVMKMFALRQYYFTNGWNVFDFIVVVLSIASLIF
SAILKSLQSYFSPTLFRVIRLARIGRILRLIRAAKGIRTLLFALMMSLPALFNIGLLLFL
VMFIYSIFGMTSFPHVRWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPP
YCDPNLPNSNGSRGDCGSPAVGILFFTTYIIISFLIVVNMYIAVILENFNVATEESTEPL
SEDDFDMFYETWEKFDPEATQFITFSALSDFADTLSGPLRIPKPNRNILSQMDLPLVPGD
KIHCLDILFAFTKNVLGESGELDSLKANMEEKFMATNLSTSSYEPIATTLRWKQEDLSAT
VIQKAYRSYVRHRSMALSNTPHVPRAEEETASLPGEGFVAFMANENCVLPDKSETASATS
FPPSYESVTRGLSDRVNMSTSSSIQNEDKATSKEVTAPGPS
NT seq
5886 nt
NT seq
+upstream
nt +downstream
nt
atggaactccccattgggtccctcgaaactaacaacttccgtcgctttactccggagtcg
ctggtggagatagagaagcaaattgctgcccagcaggcagcaaagaaaaccagagagaag
cacagggagcagaaggaccaggaggagaagctgcggccccagctagacttgaaagcctgc
aaccagctgcccaagttctatggtgagctcccagcagaactgatcggggagcccctggag
gatctagacaccttctacagcacacaccggacatttatggtgctgaacaaagggaggacc
atttcccggtttagtgccactcgggccctgtggctattcagtcctttcaacctgatcaga
agaacggccatcaaagtgtctgtccactcatatcctttgtggttcagtttatttattacc
gtcactattctggtcaattgtgtgtgcatgacccaaactgagcttccagagaagattgag
tacgtcttcactgccatttacacctttgaagcctccataaagatactggcaagagggttt
tgtctaaatgagttcacgtacctgcgagacccttggaactggctggatttcagtgtcatt
accctggcatatgttggcacagcaatagatctccgtgggatctcaggcctgcggacattc
agagttctcagagcattaaaaacagtttctgtgatcccagggctgaaggtcattgtgggg
gccctgatccactcagtgaagaaactggctgatgtgaccatcctcaccatcttctgccta
agtgtctttgccttggtggggctgcagctcttcaagggcaacctcaagaacaaatgtgtc
aagaatgccatggctgtcaatgagacaaccaactactcatctcacggaaaatgctttctt
ttcttcctttctttaccagatatcttcataaataagcgaggcacttctgatcccttactg
tgtggcaatggatctgactcaggccactgccctgatggttatatctgccttaaaaccttt
gacaacccggattttaactacaccagctttgattcctttgcctgggctttcctctcactg
ttccgcctcatgacacaggattcctgggaacgcctctaccagcagaccctgagggcatct
gggaaaatctatatgatctttttcgtgctcgtaatcttcctgggatctttctacctggtc
aacttgatcttggctgtggtcaccatggcctatgaggagcagaaccaggcaaccattgat
gaaattgaagcaaaggagaagaagttccaggagaccctcgagatgctccggaaggagcag
gaggtgctggcagcactggggattgacacaacttctctccactcccacaatggatcacct
ttaacctcaaaaaatgccagtgagagaaggcacagaataaagccaagggtgtcagagggc
tccacagaaggcaacaaatcaccccactctgatccttacaaccagcgcaggatgtctttt
ctaggcctcgcctctggaagacgccgggctagccatggcagcgtgttccatttccggttc
cctggccgagatatctcactccccgagggagtcacagatgatggagcctttcctggagac
cgcgaaagctatcggggctccctgctgctgggtgggggtgctggccagcaaggccccctc
cctagaagcccacaacccagcaaccctgactccatgcatggagaagatgaacatccccca
cttgcccctggagctgtggaagtctcggcatttgatgcaggacagaagaagactttcttg
tcagcggaatacttagatgagcctttccgagcccaaagggcaatgagtgttgtcagcatc
ataacctccgtccttgaggaactcgaggagtctgaacagaggtgcccaccctgcttgacc
agcttggctcagaagtatctgatctgggattgctgccccacgtggctgaagctcaagaca
attctctttgggcttgtgacggacccgtttgcagagctcaccatcaccttgtgcatcgtg
gtgaacaccgtcttcatggccatggagtaccatggcatgagctctaccttcgaagccatg
ctttacataggcaacattgtcttcaccgtagtttttaccgctgaaatggtcttcaaaatc
atcgccttcgacccatactattatttccagaagaagtggaatatcttcgactgcatcatc
gtcaccgtgagcctgctggagctgggcgtggccaggaagggaagcctgtctgtgctgcgg
agcttccgcttgctgcgggtcttcaagctggccaagtcctggcccaccttaaacacgctc
atcaagatcatcggaaactcggtgggggcactggggaacctcaccatcatcctggccatc
attgtctttgtcttcgctctggttggcaagcagctcctcggggaaaactaccgtagcaag
cggaaaactatctctgcgccccacgaagagtggccccgctggcacatgtgcgactttttc
cactctttcctcatcgtcttccgcatcctctgcggagagtggatcgagaacatgtgggcc
tgcatggaagtcggccagaaatccatatgcctcgtccttttcctgacggtgatggtgctg
gggaacctggtggtgctcaacctgttcatcgctctgctactgaactctttcagtgcagac
aacctcacagcctcagaagatgatggggaggtgaacaacctgcaggtggccctggcacgg
atccaggtctttggccgtcaaaccaagcaggccctttgcaacttcttcagcaggccctgc
ccgctcccctggctcaaggcagagcccgagctggtggtgaaactcccactctccagctcc
aaagcagagaaccacattgctgccaacgctgccggagggagctctggaaggctccccgct
cccagaggtcccagggatgaacacagtgacttcgtcgctaatcctactgtgtgggtctct
gtgcccattgctgagggcgaatccgatcttgatgacttggaggatgatggtgaggaatat
gctcggtgctcccagcaggaagtgatccccgaaggtcagcaggagctactgcagcaagtc
gagaggtgtgaggacctcctgacacccaggagcccacgctctggaacatcatctgaggac
ctggccccatacctgggtgagacgtggagaaacaaggctgttcctcaggcccctgcagag
ggagtggacgacacaagctcctctgagggcagcacggtggactgcccagatcctgaggag
atcctcaggaagatccccgagctggcagatgacctagaagaaccagaggactgcttcaca
gaaggatgcattcgccgctgtccctgctgcaaagtggatgccaccagtagtccgtgggac
gtgggctggcaggtgcgcaagacctgctaccgtatcgtggagcacagctggtttgagagc
ttcatcatcttcatgatcctgctcagcagtggatctctggcctttgaagactattacctg
gaccagaagcccacggtgaaagctctgctggagtacacggacagggtcttcacctttatc
tttgtgttcgagatgctgcttaagtgggtggcctatggcttcaagaagtacttcaccaat
gcctggtgctggctggacttcctcattgtgaatatctcactgacaagtctcacagcgaag
atcctggaatattctgaagtggctcccatcaaagcccttcgaacccttcgtgctctgagg
ccactgcgggctctgtctcggtttgaaggcatgcgggtagtggtggatgccctggtgggc
gccatcccatccatcatgaacgtcctcctcgtctgcctcatcttctggctcatcttcagc
atcatgggcgtgaacctcttcgcagggaagttttggaggtgcatcaactataccgatgga
gagttttcacttgtacctttgtcaattgtgaacaacaagactgagtgtgagattcaaaac
tccacccgcagtttcttctgggtcaacgtgaaagtcaactttgataatgtcgcaatgggt
taccttgcacttctgcaggtggcaacctttaaaggctggatggacattatgtatgcagct
gttgattcccgggaggtcaacatgcagcccaagtgggaggacaacgtgtacatgtatttg
tacttcgtcatcttcatcatcttcggaggcttcttcacactgaatctcttcgttggggtc
ataattgacaacttcaatcaacagaagaaaaagttagggggccaggacatcttcatgaca
gaggagcagaagaagtactacaatgccatgaagaagctgggctccaagaagccccagaag
cccatcccacggcccctgaacaagttccagggttttgtctttgacatcgtgaccagacaa
gcttttgacgtcaccatcatggtcctcatctgcctcaacatgatcaccatgatggtggag
accgatgagcagagtgaagaaaagacaaaaattctgggcaaaatcaaccagttctttgtg
gccgtcttcacaggcgagtgtgtcatgaagatgttcgccttgagacagtactacttcacc
aacggctggaacgtgtttgacttcattgtcgtggtcctctccattgccagcctgattttc
tctgcaattcttaagtcacttcagagttacttctccccaacgctcttccgagtcatccgc
ctggcccggatcggccgcatcctcagactgatccgagcggccaaggggatccgcacgctg
ctcttcgccctcatgatgtccctgcctgccctcttcaacatcgggctgctgctcttcctc
gtcatgttcatctactccatcttcggcatgaccagctttccccatgtgaggtgggaggct
ggcattgacgacatgttcaacttccagaccttcgccaacagcatgctgtgcctcttccag
atcaccacgtcggccggctgggacggcctcctcagccccatcctcaacactgggcccccc
tactgcgaccccaatctgcccaacagcaacggctctcggggggactgcgggagcccagcc
gtgggcatcctcttcttcaccacctacatcatcatctccttcctcatcgtggtcaacatg
tacattgcagtgattctggagaacttcaatgtggccacagaggagagcaccgagcccctg
agtgaggacgacttcgacatgttctatgagacctgggagaagtttgacccagaggccact
cagtttattaccttttcggctctctcagactttgcagacacgctctctggccccctgaga
atcccaaaacccaatcgaaacatactgagccagatggacctgcctttggtccctggagat
aagatccactgcttggacatcctttttgctttcaccaagaatgtcctaggagaatctggg
gagctggattctctgaaggcaaatatggaggagaagtttatggcaactaatctttcaaca
tcatcctatgaaccaatagcaaccactctccgatggaagcaagaagacctttccgccact
gtcattcaaaaggcctatcggagctatgtgcggcaccgttccatggcactctccaacacc
ccacacgtgcccagagctgaggaggagactgcatcactcccaggtgaaggctttgtggct
ttcatggcaaatgaaaactgtgtcctcccagacaaatctgaaactgcatccgccacgtct
ttcccaccatcctatgagagtgtcactagaggccttagtgacagagtcaacatgagcaca
tcgagctcaatacaaaatgaagacaaagccaccagtaaggaggtgactgcccctgggccc
tcgtga
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