Callithrix jacchus (white-tufted-ear marmoset): 100393939
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Entry
100393939 CDS
T03264
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X2
KO
K12878
THO complex subunit 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03013
Nucleocytoplasmic transport
cjc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100393939 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
100393939 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100393939 (THOC1)
03041 Spliceosome [BR:
cjc03041
]
100393939 (THOC1)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100393939 (THOC1)
Spliceosome [BR:
cjc03041
]
Complex C
Other components
EJC/TREX
100393939 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100393939 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
HsdM_N
Motif
Other DBs
NCBI-GeneID:
100393939
NCBI-ProteinID:
XP_002757154
Ensembl:
ENSCJAG00000020450
UniProt:
U3E2X0
LinkDB
All DBs
Position
13:58757252..58813935
Genome browser
AA seq
657 aa
AA seq
DB search
MSPTPPLFSLPEARMRFTKSTREALNIKNIKPLLSTFSQVPGSENEKKCTLDQAFRGVLE
EEIINHSSCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDEEAPTTCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAPE
DFLGKGPSKKILMGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMV
ENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEDNDALLKENESPDVRRDKPVTGEQIEVFANKLGEQWKILAPYLEMKDSEIR
QIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLTNDNETNS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgacgccgccgctcttcagtttgcccgaagcgcggatgcggtttacgaagtct
accagagaggccttgaacatcaaaaacatcaagccattgttaagtaccttcagccaggta
cctggcagtgaaaatgaaaaaaaatgtacccttgatcaagctttcagaggtgtcctagaa
gaagaaattataaatcattcatcatgtgaaaacgttttagctattatttctcttgctatt
gggggagtaactgaaggtatttgtactgcatctacaccttttgtattgttgggagatgtt
ttggattgtcttcctttggatcagtgtgacacaatattcacttttgtggaaaaaaatgtt
gctacttggaaatcaaatacattctattctgctgggaaaaattacttactacgcatgtgc
aatgatctcctaagaagattatctaaatcccagaatacagtcttctgtggacgaattcag
ctctttttggctaggcttttccctctgtctgagaaatcaggtcttaacttgcagagtcag
tttaatctggaaaatgtcactgttttcaataccaatgagcaggaaagcaccctgggtcag
aagcacactgaagatagagaagaaggaatggatgtagaagaaggtgaaatgggagatgag
gaagctccaacaacgtgctctattccaattgattacaacctgtatcgaaaattctggtca
cttcaggattacttcaggaaccctgtgcaatgctatgagaagatttcatggaaaactttt
ctcaagtattctgaagaagttttagctgtttttaagagttacaaactggatgatactcag
gcctcaagaaaaaagatggaagaattgaaaacaggcggagagcatgtatattttgcaaaa
tttttaacaagtgaaaagctgatggatttacaactgagtgacagtaactttcgtcgacac
atcctgttgcagtatctcattttattccaatatctcaaggggcaggtcaaattcaaaagt
tcaaactatgttttaactgatgaacaatcactttggattgaagatactacaaaatcagtt
tatcaactactatctgaaaacccccccgatggagaaagattttcaaagatggtagagcat
atattaaacactgaagaaaactggaactcatggaaaaatgaaggttgcccaagttttgtg
aaagaaagaacatcagataccaaacctacgagaataattcggaagagaacagcacccgag
gatttcctagggaaaggacccagcaaaaaaattctgatgggaaatgaggagttaacaagg
ctttggaatctttgtcctgataatatggaagcctgcaaatcagaaacaagggaatatatg
cccactttggaggaattctttgaagaagccattgaacaggcagaccctgaaaatatggtt
gaaaatgaatataaggctgtgaacaattcaaattatggttggagagccctgagattatta
gcacggagaagtcctcacttcttccagccaaccaaccagcagtttaaaagtttgccagaa
tatcttgaaaatatggtaataaagctcgccaaggagttaccacctccttctgaagaaata
aaaacaggtgaggatgaagatgaggaagataatgatgctttactgaaagaaaatgaaagt
cctgatgttcggcgagacaaacctgtaacaggagaacaaatagaggtatttgccaacaag
ctgggtgaacaatggaagattctggctccctacttggaaatgaaagactcagaaattagg
cagattgagtgtgacagtgaagacatgaagatgagagctaagcagctgctagttgcctgg
caagatcaagagggagttcatgcgacgcctgagaatctgattaatgcactgaataagtct
ggattaagtgaccttgcggaaagtctaactaatgacaatgagacaaatagttag
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integrated database retrieval system
