Callithrix jacchus (white-tufted-ear marmoset): 100398509
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Entry
100398509 CDS
T03264
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100398509 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100398509 (LIG4)
Enzymes [BR:
cjc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100398509 (LIG4)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100398509 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
100398509
NCBI-ProteinID:
XP_008998912
Ensembl:
ENSCJAG00000014689
LinkDB
All DBs
Position
1:complement(23177338..23190010)
Genome browser
AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQKTKGRAEKIRHFREFLDSWRNFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHG
DAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSVASNNSAKRKDLVKKSLLQLITQSSA
LEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADIEHIEKDMKHQTFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTD
QFGASPTEGSLTPFIHNAFQTDIHICILDGEMMAYNPNTQTFMQKGIKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGHETLRKRYEILNSIFTPIPGRIEVVQKTQAHTKDEVIDALNE
AIDKREEGIMIKRPLSMYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAEKPPAGKKPSVFHTLSRVGSGCTMKELYDLGLRLAKYWRPFHKKTPPSSILC
GTEKPEVYIEPCNSVIVQIKAAEIVPSDIYKTGCTLRFPRIEKIRDDKEWHECMTLDDLE
QLRGKASGKLASKHFYVGGDDGPPEKKRKAPPKMKKVIGIIEHLKAPNLTNVNKISNIFE
DVVFCVMSGTDSQPKSDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIILSNKYDV
VKPAWLLECFKTKSFVPWQPCFMIHMCPSTKEHFAREYDCYGDSYFVDTDLNQLKEVFSG
IKNSNKLTPEEMASVIADLEHRYSWDRSPLSMFRRHTIYLDLYAVINDLSTKTEGTRLAI
KALELRFHGGTVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKDSWVTDSIDK
CELQEENQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacaaacttcacaaactgttgcatctcacgttccttttgcagatttgtgt
tcaactttagaacgaatacagaaaactaaaggacgtgcagaaaaaatcagacactttagg
gaatttttagattcttggagaaattttcatgatgctcttcataagaaccaaaaagatgtc
acagactctttttatcctgcaatgaggctaattcttcctcagctagaaagagagagaatg
gcctatggcattaaagaaactatgcttgctaagctttatattgaattgcttaatttacct
agagatggaaaagatgccctcaaacttttaaactacagaacacccactggaactcatgga
gatgctggagactttgcaatgattgcatattttgtgttgaagccaagatgtttacagaaa
ggaagtttaaccatacagcaagtaaatgaccttttagactcggttgccagcaataattct
gctaaaagaaaagacctagtaaaaaagagtcttcttcaacttataactcagagttctgca
cttgagcaaaagtggcttattcggatgatcataaaggatttaaagcttggagttagtcag
caaactatcttttctgtttttcataacgatgctgctgagttgcataatgtcactacagat
ctggaaaaagtctgtaggcaactgcatgatccttctgtaggactcagtgatatttctatc
actttattttctgcctttaaaccaatgctagctgctattgcagatattgagcacattgag
aaggatatgaaacatcagactttctacatagaaaccaagctagatggtgaacgtatgcaa
atgcacaaagatggagatgtatacaaatacttctcccgaaatggatataactatactgat
cagtttggtgcttctcctactgaaggttctcttaccccattcattcataatgcattccaa
acagatatacacatctgtattcttgatggtgagatgatggcctataatcctaatacacaa
actttcatgcaaaagggaattaagtttgatattaaaagaatggtagaagattctgatctg
cagacttgttattgtgtttttgatgtattgatggttaataataaaaagctagggcatgag
actctgagaaagaggtatgagattcttaatagtatttttacaccaattccaggtagaata
gaagtagtgcagaaaacacaagctcatactaaggatgaagtaattgatgcattgaatgaa
gcaatagataaaagagaagaaggaatcatgataaaacgtcctctatccatgtacaaacca
gacaaaagaggtgaagggtggttaaaaattaaaccagaatatgtcagtggactaatggat
gaattggacattttaattgttggaggatattggggtaaaggatcgcggggtggaatgatg
tctcattttttgtgtgcagtagcagagaagcccccagctggtaaaaagccatctgtgttt
catactctctctcgtgttggctctggttgtaccatgaaagaactgtatgatctgggtctg
aggttggccaaatactggaggccttttcataaaaaaactccaccaagtagcattttatgt
ggaacagagaagccagaagtgtacattgaaccttgtaattctgtcattgttcagattaag
gcagcagagatagtacccagtgatatatataaaactggctgtaccttgcgttttccacga
attgagaagataagagatgacaaagagtggcatgagtgcatgacactggatgacctagaa
caattaaggggaaaagcatctggaaagctcgcatctaaacacttttatgtaggtggtgat
gacggaccaccagaaaaaaagcggaaagctcccccaaaaatgaagaaagttattggaatt
attgagcacttaaaagcacctaaccttactaacgtaaacaaaatttctaatatatttgaa
gatgtagtgttttgtgttatgagtggaacagatagccagccaaaatctgacctggagaac
agaattgcagaatttggtggttatatagtacaaaacccaggcccagacacatactgtgta
attgcagggtctgagaacatcagagtaaaaaacataattttgtcaaataaatatgatgtt
gtcaagcctgcatggcttttagaatgttttaagaccaaaagctttgtgccatggcagcct
tgctttatgattcatatgtgtccatcaaccaaagaacatttcgcccgtgaatatgattgc
tatggtgatagttattttgttgatacagacttgaaccaactgaaagaagtattctcagga
attaaaaattctaacaagctcactcctgaagaaatggcttctgtgattgctgatttagag
catcggtattcctgggatcgctcccctctcagtatgtttcgacgccacaccatttatttg
gacttgtatgctgtaattaatgacctgagtaccaaaactgaggggacgagattagctatt
aaagccttggagcttcgatttcatggaggaacagtagtttcttgtttagctgagggagtg
tctcatgtaatcattggggaagatcatagtcgtgttgcagatttcaaagcttttagaaga
acttttaagagaaaatttaaaatcctgaaagacagttgggtaactgattcaatagacaag
tgtgaattacaagaagaaaaccaatatttgatttaa
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