Callithrix jacchus (white-tufted-ear marmoset): 100403232
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Entry
100403232 CDS
T03264
Symbol
KDM2A
Name
(RefSeq) lysine-specific demethylase 2A isoform X3
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
100403232 (KDM2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjc03000
]
100403232 (KDM2A)
04121 Ubiquitin system [BR:
cjc04121
]
100403232 (KDM2A)
03036 Chromosome and associated proteins [BR:
cjc03036
]
100403232 (KDM2A)
Enzymes [BR:
cjc01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
100403232 (KDM2A)
Transcription factors [BR:
cjc03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
100403232 (KDM2A)
Ubiquitin system [BR:
cjc04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
100403232 (KDM2A)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
100403232 (KDM2A)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
100403232 (KDM2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
Cupin_1
Motif
Other DBs
NCBI-GeneID:
100403232
NCBI-ProteinID:
XP_009006798
Ensembl:
ENSCJAG00000001071
LinkDB
All DBs
Position
11:120961429..121105483
Genome browser
AA seq
1145 aa
AA seq
DB search
MRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLI
FKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEER
EKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQ
KYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIF
LGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDR
TRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEEA
VDREPRRLSSRRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKTLSGDSSSDSSRGSHNGQ
VWDPQCGPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLE
ELANSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAA
SPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHS
VTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ
EDSSEKAQKRKMEESDEEAVQAKVLRPLRSCDEPLTPPPHSPTSMLQLIHDPVSPRGVVT
RSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKIRGS
YLTVTLQRPTKELHGTSIVPKLQAITASSANLRHSPRVLVQHCPARTPQRGDEEGLGGEE
EEEEEEEEEDDSAEEGGAARLNGRGSWAQDGDESWMQREVWMSVFRYLSRRELCECMRVC
KTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNRLP
GLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPADKPGQDNRSK
LRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSSTRYSLT
ELNMAGCNKLTDQTLIYLRRIANVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDEKL
IQKIS
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgcgacggcgctatgaagatgacggcatttcagatgatgaaattgaagggaaaagaact
tttgacttggaagaaaaactgcataccaacaaatataatgccaattttgttacgtttatg
gaaggaaaagattttaatgtagagtatatccagcggggtggtttgagagatcctctgatt
ttcaagaattctgatggacttggaataaaaatgccggatccagacttcactgtgaatgat
gtcaaaatgtgtgtggggagtcgtcgcatggtggatgtcatggacgtgaacacgcaaaaa
ggcattgaaatgaccatggctcagtggacacgctactatgagaccccagaggaggagcga
gagaaactctataatgtcatcagccttgagtttagccacaccagactggagaacatggtg
cagaggccctccacggtggatttcattgactgggtagacaacatgtggccaaggcactta
aaggaaagccagactgaatcaacaaatgccatcttggagatgcaataccctaaagtgcag
aagtactgtctaatgagtgttcgaggctgctatactgacttccatgtggactttggtggt
acctctgtttggtatcacatccatcaagggggaaaggtcttctggctcatcccccctaca
gcccacaacctggagctgtacgagaattggctgctctcagggaaacagggagacatcttt
ctgggtgaccgggtatcagattgccagcgcattgagctcaagcagggctataccttcgtc
attccctcaggctggattcatgccgtgtatactcctacagacacgttagtgtttggaggc
aattttttgcatagcttcaacatccctatgcagttaaaaatatacaacattgaagatcgg
acacgggttccaaataagtttcgctatccattctactatgagatgtgttggtatgtgttg
gaacgctatgtgtactgcataaccaaccgttcccacctgaccaaggaatttcagaaagag
tccctcagcatggatttggagttaaatgggttggagtctggaaatggggatgaggaagca
gtggatcgagaaccccgacgcttgagcagcaggcgttctgtcctcactagccctgtagcc
aatggtgtcaacttggattatgatggactgggcaaaacctgccgaagtcttccaagtctg
aagaaaactttgtctggggactcatcttctgactctagccggggttcccacaatggccaa
gtgtgggatccccagtgtggtccccgaaaggacaggcaagtgcatctgacccattttgag
cttgaaggccttcgctgccttgtagataagttggagtctctgccactgcacaagaaatgt
gtccccacagggatagaagatgaagatgctctcattgctgatgtcaagattttgctggag
gagcttgccaacagcgatcccaagttagccctcactggagttcctatagtacagtggcca
aaaagggataagcttaaattccccactcggccaaaggtgcgggttcctaccatccccatt
acaaagcctcacactatgaaaccagctccacggttaacacctgtgaggccagctgctgcc
tctccgattgtgtcaggggccagacggagacgagtgcggtgtcgaaaatgcaaagcctgt
gtacaaggagagtgtggtgtttgccactactgcagagacatgaagaagtttggggggcct
ggacgcatgaagcagtcctgtgtcctccgacagtgcttggcacccagactgcctcactca
gtcacatgttccctttgtggagaggtggatcagaatgaagagacacaagactttgagaag
aaactcatggaatgctgtatctgcaatgagattgttcatcctggctgcctccagatggat
ggagaggggttgcttaatgaggaattgccaaattgctgggaatgtccaaagtgctaccag
gaggacagctccgaaaaagcccagaagcggaaaatggaagagagtgatgaagaagccgtg
caagccaaagtcctgcggcccctgcggagctgcgatgagcctctcacgcccccgcctcat
tcacccacttccatgctgcagctcatccatgacccggtttccccccggggtgtggtgact
cggtcatcccctggggctggccccagcgaccaccacagtgccagccgtgatgagcgcttc
aaacggcggcagttgctgcggctgcaggccacagagcgcaccatggtacgggaaaaggag
aacaatcccagcggcaaaaaggagctgtctgaagttgagaaagccaagatccggggatcg
tacctcactgtcacgctacagaggcccaccaaagagctccacgggacatccattgtgccc
aagctgcaggccatcacggcctcctctgccaaccttcgccattccccccgtgtgctagtg
cagcactgcccagcccgaaccccccagcgtggggatgaggaggggctggggggagaggag
gaggaagaggaggaggaggaggaggaagatgacagtgcagaggaggggggtgcagccagg
ctgaatggccggggcagttgggctcaggatggagacgaaagctggatgcagcgggaggtc
tggatgtctgtcttccgctacctcagccgcagagaactttgtgaatgtatgcgagtgtgc
aagacatggtataaatggtgctgcgacaagagactttggacaaaaattgacttgagtagg
tgtaaggccatagtgccccaggccctcagtggcatcatcaagaggcagccagtcagcctt
gacctcagttggaccaacatctctaaaaagcaactgacatggctcgtcaacaggctgcca
ggactgaaagacctcctcctagcaggctgctcctggtctgcagtctctgccctcagcacc
tccagctgcccccttctcaggacccttgatcttcggtgggcagtgggaatcaaggaccct
caaattcgggacttgctcactccaccggctgataaaccaggtcaggacaatcgcagcaag
ctccggaacatgaccgacttccggctggcaggccttgacatcaccgatgccacacttcgc
ctcatcattcgccacatgcccctcctgtctcgactcgacctcagtcactgcagccacctt
acagatcagtcctccaatctactcactgctgtcgggtcttccactcgctactccctcaca
gagctcaatatggcaggttgcaataaattgacagaccagaccctgatctacctacggcgc
attgccaacgtcaccttgatcgaccttcgaggatgcaagcagatcactcgaaaagcctgc
gagcacttcatctcagacttgtccatcaacagcctctactgcctgtctgacgagaagttg
atacagaagatcagctaa
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