Callithrix jacchus (white-tufted-ear marmoset): 100407035
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Entry
100407035 CDS
T03264
Symbol
SKIC3
Name
(RefSeq) SKI3 subunit of superkiller complex protein isoform X1
KO
K12600
superkiller protein 3
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100407035 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100407035 (SKIC3)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
100407035 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_16
TPR_14
TPR_8
TPR_17
TPR_11
TPR_12
ANAPC3
TPR_9
Sel1
TPR_15
TPR_20
Fis1_TPR_C
Retrotran_gag_2
BTAD
TPR_5
PknG_TPR
TPR_6
HrpB1_HrpK
TPR-S
Motif
Other DBs
NCBI-GeneID:
100407035
NCBI-ProteinID:
XP_035147085
LinkDB
All DBs
Position
2:111839272..111944951
Genome browser
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPDQLLAWQGLANLYEKCNHINAKDDLPAVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHLEVARTWHKLIKTRQEEGADNQELHQLWRKLTQFLAESTEDQNNETQQ
LLLTAFEKALGLSDNIPSEDHQILYRHFIHSLSKFPHETARLKKACEGMINIYPTVQYPL
EVLCLHLIESGNLTDEGQQYCCRLLEMDSKSGPGLIGLGIKALQDKKYEDAIRNLTEGLK
ESPLCTTGWLHLAEAQVKIHRPKEAIFSCSQALNIIDNHGASGGSLYQRNLCLRLKTEAL
IKLSDYESSEEAIRTLDQVSDADNIPGLLVLKSLAYQNKGSLDEAAKIMEDLLSSYPDLA
EVHALEGLIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALT
HFLKAARLDTYMGKVFCYLGHYYRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEDMETALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFSKASELNPESTYSVFKVAAIQQILGKYKEAVAQYQVIIK
KTEDYVPALKGLGECHLLMAKAALVDYLDGKAVDYIEKALEYFTCALQHRADVSCLWKLA
GDACTCLYAVSPSKVNVNVLGVLLGQKEEKQVLKKNELLHLGGRCYGHALKLMSTSNTWC
DLGINYYRQAQHLAETGSNMNDLKELLEKSLNCLKKAVRLDSNNHLYWNALGVVACYSGI
GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAETVGSYDTMDLFRHTTELNMHTEGALGYAYWVCTTLQDKSNRETELYQYNILQMN
AIPAAQVVLNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDQDTYN
VAVRNYGRLLCSICEYDKAIQAFKSTPLEELEDITGFALALFMKGLYKESSKAYERALSI
VELEQDKAHILTALAITEYKQGKMDVAKTLLFKCSILKEPTTESLQALCALGLAMQDATL
SKAALNELLKHIKHKDSNYQRCLLTSAIYALQGRSVSVQRQASKAVHSNPGDPALWSLLS
RVVAQYAQRNAKGGVVAGNVAHILDSNHGKKALLYTTVNQLAMGSSSAEDEKNIALKTIQ
KAALLSPGDPAIWAGLMAAYHADDKLALVNNTQSKRMDLYLALLSAVTASIKDKKFFEDY
NQSLEKWSLSQAVTGLIDTGRISEAETLCTKYLKSNPDQPAIILLLRQVQCKPLLESQKP
LPDAVLEELQKTVMSNSTSVPAWQWLAHVYQSQGMMSAAEMCYRKSLQVASQQGSWSGKL
SSLLRLALLALKVCMANISNDHWPSLVQEATTEALKLCFCPLAILVQALLQFNRKMGARE
TRRLLERVVYQPGYPKSIVSTARWYLLRHLYAKDDYELIDVLVNNAKTHGDARALELNQR
LSSQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaggaagtgaagactgctctaaaaagtgctcgagatgcaatcagaaacaaa
gaatataaagaagctttgaaacattgtaagacagtgttaaaacaggagaaaaataactat
aatgcctgggtttttattggtgttgctgcagctgaactagaacaacctgatcaggcccag
ggtgcctataaaaaagctgctgaattagagccagaccaattactagcttggcaggggttg
gcaaacttgtatgagaaatgtaatcacataaatgctaaggatgacttacctgctgtttac
caaaagctcctggatctttatgaaagtgttgacaaacagaagtggtgtgatgtctgcaag
aaactagtggatctatattaccaagaaaagaaacacctagaggtggctcgaacatggcac
aagttgataaagacacggcaggaagaaggcgcagacaaccaagagcttcatcaactatgg
agaaagttgactcagttcctggctgaaagtacagaggaccagaataatgaaacccagcaa
ttgcttttaactgcttttgagaaggcactgggattatcagataacattcctagtgaagat
caccagatactttataggcatttcattcacagtttatccaaatttccacatgagactgct
agattaaagaaggcctgtgaaggaatgataaacatctatcctactgtacagtatccatta
gaagtgctttgtttgcatttaattgaatcaggaaatcttactgatgagggacagcagtat
tgttgtagattattagaaatggattcaaaaagtggtccaggcctcattggcttaggcatt
aaagcattacaagacaaaaagtatgaagatgctattaggaacctaacagaagggttaaag
gaaagccctctctgcacaactggatggcttcatctggcagaagcccaagtcaaaatacat
agacctaaagaagctattttttcatgtagtcaagctctgaacatcatagataaccatggt
gcgtctggtggcagtctttaccagaggaatctttgtcttcgtttgaaaacagaggctttg
attaaactttcagattatgaatcttcagaggaagcaattcgtactcttgatcaggtttcc
gatgcagataatatcccaggccttttggttctcaaaagcttggcctatcagaacaaaggt
tcattagatgaagctgcaaagattatggaagaccttctctcttcttaccctgacttagct
gaagttcatgcccttgagggtttgattcatttcaccaaaaaggactatctacaagcagaa
aaatgttttcagagagctcttgagaaagatactgaagttgcggaatatcattaccaactg
ggattaacatactggttcatgggtgaagagacaagaaaagataaaacaaaggctcttacc
cactttctgaaggctgcaagactggatacatatatgggcaaagttttctgctatttaggt
cattattacagagatgtagtgggagataaaaacagagctcgtggatgttataggaaagcc
tttgaattagatgacactgatgctgaatctggagctgcagcggttgacctaagtgtggag
cttgaagatatggaaactgctttagctatcctaacaacagtaactcaaaaggcaagtgct
ggaacggcaaaatgggcctggcttaggcgaggactgtactatttgaaagctggtcagcat
tctcaagcagtggctgatttacaggcagcattaagagcagacccaaaggacttcaattgt
tgggaatcattaggagaggcctacttaagcagaggaggctacacaacagccttgaaatct
ttctcgaaagccagtgagctgaacccagaatcgacatacagtgtgtttaaggttgcagca
atacagcaaatcctaggcaaatataaggaggctgtagctcagtaccaggtgatcattaaa
aagacagaagattatgtgcctgctttaaaaggtttgggtgaatgccatcttctgatggca
aaagcagctctagttgattatcttgatggaaaagctgtagactacatagaaaaagcactg
gaatattttacttgtgctctacagcatcgagcggatgtgtcctgcctctggaagctagct
ggggatgcttgcacctgtctttatgctgtctcaccatctaaagtgaatgttaatgtttta
ggagtccttctaggtcagaaagaagaaaaacaagtattaaagaaaaatgagctcctccac
cttggaggaaggtgctatggtcatgcattaaaactgatgtctacatctaatacgtggtgt
gatcttgggattaattattatcgccaagcacaacatctagcagaaacaggcagcaatatg
aatgatcttaaggagctgctggagaaatctttaaattgtctgaaaaaagcagtgagactc
gacagtaataatcacttatactggaatgctcttggtgtggttgcatgttacagtggtatt
ggaaattatgcccttgctcagcactgtttcatcaaatcaatccagtcagaacaaattaat
gctgttgcatggaccaacttgggagtgttatacctcacaaatgaaaatattgagcaagct
catgaagctttcaaaatggcccagtcccttgatccatcttatttaatgtgctggattgga
caagctcttattgctgagacagttggaagttatgacacgatggatctcttcaggcacact
acagaactcaatatgcataccgaaggagcattaggttatgcatattgggtctgcacaaca
ttgcaagataaaagcaacagagaaacagagctgtatcagtacaacatcctccagatgaat
gctattccagcagcacaagttgttttgaataaatatgtagaaagaattcagaattatgct
ccagctttcacaatgttaggttacttaaatgaacatctgcaactgaaaaaggaagcagca
aatgcataccaaagggcaattttgttgttacagactgcagaagaccaagatacttataat
gttgcagtaagaaattatggcagattattatgttccatttgtgaatatgataaagctatc
caggcttttaagtcaacaccccttgaagagttagaagacatcacaggttttgcattggct
ttattcatgaaggggctttataaagagagtagcaaagcctatgagagagccttgtctatc
gttgaattggagcaagacaaagcccatatcttgacagctctggcaataactgaatataaa
caaggaaaaatggatgtagccaagacactgctatttaaatgttctatcttaaaggaacca
accacagaaagccttcaagccctgtgtgctctagggttggcaatgcaggatgctacactg
tcaaaagcagcacttaatgagttactgaagcacatcaaacacaaagacagtaattatcag
agatgccttcttacatcagccatctatgcactccaaggccgcagtgtgtcagtgcaaaga
caagcatctaaagctgttcacagtaaccctggtgaccctgctctttggtctctgttgtct
cgagttgttgcgcagtatgctcaacgaaatgcaaagggaggtgttgtagcaggaaatgtg
gctcatattctggactcaaatcacggaaagaaggcattactgtatactacagtaaatcag
ttggctatgggaagcagttcagcagaagatgaaaaaaatattgcactaaagaccattcag
aaggcagctctcctttctccaggtgaccctgctatctgggctgggctaatggcagcctat
catgctgatgataaactggccctagtgaacaacactcagtcaaagaggatggatttatac
ttggcactgttatctgctgttactgcttcaattaaagacaaaaaattctttgaagattac
aaccagtctcttgaaaagtggtctctctcacaagctgtcactggtctaatagacacagga
agaatatctgaagctgaaactctctgcacaaagtatttaaaaagtaaccctgatcagcca
gccattatcttacttttgagacaagttcagtgtaaaccactcctggagtcacaaaagcca
ctcccagatgctgtacttgaagaactacaaaaaacagtcatgtccaactcaacctctgtt
ccagcttggcagtggctggcacatgtgtatcagtcccaaggaatgatgagtgctgcagag
atgtgttacagaaagagtctacaagtggcatcccaacagggcagttggagtgggaagctc
tcaagtctgttgagactagcactgcttgcattaaaagtctgtatggctaacatttccaat
gatcactggccatctttggttcaagaagctacaactgaggccttgaaactttgcttttgt
ccactggctattcttgtacaagctttgttacaattcaaccgcaaaatgggggcaagagag
acacgacgtcttttggagagagtggtatatcagcctggctatcccaaatctattgtatca
actgcacgttggtacctactgagacacttatatgccaaagacgactatgagcttattgat
gtgctggtaaacaatgccaaaacccatggagatgcaagagcattggaactgaatcagaga
ttgtcctcacaataa
DBGET
integrated database retrieval system
