Callithrix jacchus (white-tufted-ear marmoset): 100415094
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Entry
100415094 CDS
T03264
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03030
DNA replication
cjc03410
Base excision repair
cjc03420
Nucleotide excision repair
cjc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100415094 (LIG1)
03410 Base excision repair
100415094 (LIG1)
03420 Nucleotide excision repair
100415094 (LIG1)
03430 Mismatch repair
100415094 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjc03032
]
100415094 (LIG1)
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100415094 (LIG1)
Enzymes [BR:
cjc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100415094 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
100415094 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
100415094 (LIG1)
DNA replication proteins [BR:
cjc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
100415094 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
100415094 (LIG1)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
100415094 (LIG1)
NER (nucleotide excision repair)
Other NER factors
100415094 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
100415094 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
100415094
NCBI-ProteinID:
XP_035143153
Ensembl:
ENSCJAG00000000504
LinkDB
All DBs
Position
22:40500150..40554291
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFHPKKEGKVKKPEKEASNSSRETEPPPKVALKEWNGVVSESDSPVKRPGRKA
ARVLGSEGEEEDEDLSPAKGQKPAPDCPQVSPPRPATSPESNPSLSDTSPMDSSPSGIPK
RRTARKQLPKRTIEEVLEEENADKDREAKRKKEEEEAETPKENLTEAEVATEKEREDGDQ
PTVPPKPLKTSEAETPMESISEPEVAMRQELQDEEEQAKPPRRAPKTLSSFFTPRKPAIK
KEVKEEEPGALGKEGAEGPLEPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEE
VSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNQLGPPQQGLELGVGDGVLLKAVAQA
TGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFTKFRDIARLTGSASTA
KKIDIIKALFVACRHSEARYIARSLSGRLRLGLAEQSVLAALSQAMSLTPPGQEFPLAVV
DAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCKLSPGIPLK
PMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALESGEVKIFSRNQEDNTGKYPDI
ISRIPRIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFD
LIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCEG
LMVKTLDVDATYEIAKRSHNWLKMKKDYLSGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA
CYDEDSEELQAICKLGTGFSDEELEAHHQSLQALVLPSPRPYVRIDDAVTPDHWLDPSAV
WEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQS
QIQNQQGEEDTGSDPEDTY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggtaaagtgaagaaacct
gagaaggaggcatccaacagcagcagagagacggagccccctccgaaggtggcactgaag
gagtggaatggagtggtgtccgagagtgactctccagtgaagaggccagggaggaaggcg
gcccgggtcctgggcagtgaaggggaagaggaggatgaagaccttagccctgccaaaggc
cagaagcctgcccccgactgcccacaggtctcccctccccgccctgctacatctcctgag
agcaacccttccctctccgacacctctcccatggacagctccccctcagggatcccgaag
cgtcgcacagctcggaagcagctcccaaaacggaccattgaggaagtcctggaagaggag
aatgcagacaaggacagagaagccaagaggaagaaggaggaggaagaagcagagaccccg
aaagaaaatctcacagaggctgaagtagcaacagagaaggaaagagaagatggggaccag
cccactgtgcctcccaaacccctgaagacatctgaagcagagaccccgatggaaagcatt
tcagagcctgaggtggccatgagacaggagctgcaggacgaggaggagcaggccaagcct
ccccgcagagctcccaagacgctcagcagcttcttcaccccccggaagccagcaatcaaa
aaagaagtgaaagaagaggagccgggggctctgggaaaggagggagctgagggacccctg
gagccatccggttacaatcctgccaagaacaactaccatcccgtggaagacgcctgctgg
aaaccgggccagaaggtcccttacctggcggtggcccggacatttgagaagatcgaggag
gtgtctgctcggctgcggatggtggagacgctgagcaacttgctgcgctccgtggtggcc
ctgtcgcccccggacctcctccctgtcctctacctcagcctcaaccagcttgggccaccc
cagcagggcctggagcttggcgtgggtgatggcgtacttctcaaggcagtggcacaggcc
acaggtcggcagctggagtctgtccgggctgaggcagccgagaagggtgacgtggggctg
gtggccgagaatagccgcagcacccagaggctcatgctgccacctcctccgctcactgcc
tccggggtcttcaccaagttccgagacatcgccaggctcactggcagtgcttccacagcc
aagaagatagacatcatcaaagccctctttgttgcctgccgccactcagaagcccggtac
atcgccaggtccctgagcggacggctgcgccttgggctagcagagcagtcggtgctggcc
gccctctcccaggccatgagcctcacacccccaggccaagaattcccactggccgtggtg
gatgctggaaagggcaagacagcagaggcccgaaagacgtggctggaggagcaaggcatg
atcctgaagcagacgttctgtgaggtgcctgacctggaccgaattgtccccgtgctgctg
gagcatggcctggaacgtctgccggagcactgcaagctaagcccagggattcccctgaaa
ccaatgttggcccatcccacgcggggtgtcagtgaggtcctgaagcgctttgaggaggca
gctttcacctgcgagtacaaatatgacgggcagagggcacagatccacgctctggaaagc
ggggaggtgaagatcttcagcaggaatcaggaagacaacactgggaagtacccggacatc
atcagccgcatccccaggatcaaactcccatcggtcacatccttcatcctggacgccgaa
gctgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacccgc
aaacgcaaggaggtggatgcgtctgagatccaggtgcaggtgtgtttgtacgccttcgac
ctcatctacctcaacggagagtccctggtacgtgagcccctttcccgacgccggcagctg
ctccgggagaactttgtggagacagagggcgagttcgtcttcgccacctccctggacacc
aaggacgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcctgcgagggg
ctaatggtgaagaccctggatgtcgatgccacctatgagattgccaagagatcgcacaac
tggcttaagatgaagaaggactacctcagtggcgtgggcgacactctggacctggtggtg
attggtgcctacctgggccgggggaagcgtgccggccgatacgggggcttcctgctcgcc
tgctacgatgaggacagtgaggagctacaggccatatgcaagcttggaactggcttcagc
gacgaggagctagaggcgcatcaccagagcctgcaggccctggtgctgcccagcccacgc
ccctacgtgcggatagatgacgctgtgactcccgaccactggctggaccccagcgccgtg
tgggaggtgaagtgcgctgacctctccctctcccccatctaccctgctgctcggggcctg
gtggatagtgacaagggcatctcccttcggttccctcggttcattcgagtccgtgaagac
aagcagccggagcaggcgaccaccagtgcccaggtggcctgtctgtaccggaagcaaagt
cagattcagaaccagcaaggcgaggaggacacaggctctgaccctgaagatacgtattaa
DBGET
integrated database retrieval system