Callithrix jacchus (white-tufted-ear marmoset): 118144411
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Entry
118144411 CDS
T03264
Symbol
SOX5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjc03000
]
118144411 (SOX5)
Transcription factors [BR:
cjc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118144411 (SOX5)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
118144411
NCBI-ProteinID:
XP_035114306
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All DBs
Position
9:43162311..44197159
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AA seq
828 aa
AA seq
DB search
MWIPIPLLIAHRVLWSLELRKLWLGCQDVRTTLRKARANSETDRVQLETIIGGRCDKGKL
CFSSMLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHV
SFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQKAEEG
GRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDK
LLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQ
QMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAQ
QGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGG
KLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSP
HMPALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQ
VLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNLSGDSDGSA
GVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWK
AMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQE
MRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGV
KGEEPHIKEEIQAEDINGEIYDEYDEEEDDPDVDYGSDSENHIAGQAN
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgtggatacctattcccctcctcatcgcacatcgtgttttatggagtttggagctgagg
aaactttggttgggttgccaggacgttcgcaccactttgcggaaagcacgagctaacagt
gagaccgacagagttcagttggagacgatcataggtggccgctgtgacaaagggaaattg
tgcttttccagcatgcttactgaccctgatttacctcaggagtttgaaaggatgtcttcc
aagcgaccagcctctccgtatggggaagcagatggagaggtagccatggtgacaagcaga
cagaaagtggaagaagaggagagtgacgggctcccagcctttcaccttcccttgcatgtg
agttttcccaacaagcctcactctgaggaatttcaaccagtttctctgctgacgcaagag
acttgtggccataggactcccacttctcagcacaatacaatggaagttgatggcaataaa
gttatgtcttcatttgccccacacaactcatctacctcacctcagaaggcagaagaaggt
gggcgacagagtggcgagtccttgtctagtacagccctgggaactcctgaacggcgcaaa
ggcagtttagctgatgttgttgacaccttgaagcagaggaaaatggaagagctcatcaaa
aacgagccggaagaaacccccagtattgaaaagctactctcaaaggactggaaagacaag
cttcttgcgatgggatcggggaactttggcgagataaaagggactcctgagagcctagct
gagaaagaaaggcaactcatgggtatgatcaaccagctgaccagtctgcgagagcagctc
ttggctgcccacgatgagcagaagaaactagctgcctctcagattgagaaacagcgtcag
caaatggagctggccaagcagcagcaagaacagattgcaagacaacagcagcagcttctg
cagcaacaacacaaaatcaatttgctccagcaacagatccagcaggttcaaggtcagctg
ccgccattaatgattcccgtattccctcctgatcaacggacactggctgcagctgcccag
caaggattcctcctccctccaggcttcagctataaggctggatgtagtgacccttaccct
gttcagctgatcccaactaccatggcagctgctgccgcagcaacaccaggcttaggccca
ctccaactgcagcagttatatgctgcccagctagctgcaatgcaggtatctccaggaggg
aagctgccaggcataccccaaggcaaccttggtgctgctgtatctcctaccagcattcac
acagacaagagcacaaacagcccaccacccaaaagcaaggatgaagtggcacagccactg
aacctatcagctaaacccaagacctctgatggcaaatcacccacatcacccacctctccc
catatgccagctctgagaataaacagtggggcaggccccctcaaagcctctgtcccagca
gcgttagctagtccttcagccagagttagcacaataggttacttaaatgaccacgatgct
gtcaccaaggcaatccaagaagctcggcaaatgaaggaacaacttagacgggaacaacag
gtgcttgatgggaaggtggctgttgtgaatagtctgggtctcaataactgccgaacagaa
aaggaaaaaacaacactggagagtctgactcagcaactggcagttaaacagaatgaagaa
ggaaaatttagccatgcaatgatggatttcaatctgagtggagattctgatggaagtgct
ggagtctcagagtcaagaatttatagggaatccagaggacgtggtagcaatgaaccccac
ataaagcgtccaatgaatgccttcatggtatgggctaaagatgaacggagaaagatcctt
caagcctttcctgacatgcacaactccaacatcagcaagatattgggatctcgctggaaa
gctatgacaaacctagagaaacagccatattatgaggagcaagcccgtctcagcaagcag
cacctggagaagtaccctgactataagtacaagcccaggccaaagcgcacctgcctcgtg
gatggcaaaaagctgcgcattggtgaatacaaggcaatcatgcgcaacaggcggcaggag
atgcggcagtacttcaatgttgggcaacaagcacagatccccattgccactgccggtgtt
gtgtaccctggagccatcgccatggctggcatgccctcccctcacctgccctcggagcac
tcaagtgtgtctagcagcccagagcctgggatgcctgttatccagagcacttacggtgtg
aaaggagaggagccacatatcaaagaagagatacaggccgaggacatcaatggagaaatt
tatgatgagtacgatgaggaagaggatgatccagatgtagattatgggagtgacagtgaa
aaccatattgcaggacaagccaactga
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