Corynebacterium jeddahense: CJEDD_04120
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Entry
CJEDD_04120 CDS
T08816
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cjh
Corynebacterium jeddahense
Pathway
cjh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cjh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJEDD_04120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjh03400
]
CJEDD_04120 (mfd)
Enzymes [BR:
cjh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJEDD_04120 (mfd)
DNA repair and recombination proteins [BR:
cjh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CJEDD_04120 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
CbiX
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WCZ38438
LinkDB
All DBs
Position
854043..857669
Genome browser
AA seq
1208 aa
AA seq
DB search
MTDATPPVLGGLLTTALTDPKLKGLVTHVGDEHLHITGIDQSRSWAAGAIARETPLLLVT
ATGHEAEDLTAELKAILGEEKVAHFPAYETLPHERLSPAADIVGRRSKVLWEMPQVIVAA
ARAVCQPVLPAVEPIRVALEAEYDFEELTRELTYFAYKHVDMVAARGEFATRGGIIDVFP
TTALNPVRIEFWGDEVTDIRTFAVADQRTVDEVTSVELHPARQLLIDDSVATKADELARK
YPSNPTLSNLLARVSEKVPADGMEALIPALIDATFSVLPELMPAGSIVLVTNPEKVKARI
ADLEATDQEFLEAGWEAAAMGAEGPLAVEGLDVSASSYRSYESLEISARKAGNAWWTFAP
PGMFGADDTLTLPLEFEAAPAPKGDPKQIEQLYATLKLHLQNHGRAAFVAPAKGTVERMA
ERLRERGVSARVATPGLEPVEGAVTLYQALSHAGLVFGGPNLVVVTETDVTGNRVGDIAG
AKRRAPRRRNRVDPLALQPGDFVVHDTHGIGKFVKMAERTIKAGDEDSRREYIVLEYQPA
KRGQPGDQLWVPMESLDLLSKYTGGEQPSLSKMGGSDWKTTKRKARAAVREIAGELVELY
AKRQAAPGHAFAPDTPWQHEMEDAFPYVETEDQLNAIEAVKEDMEKPVPMDRVIVGDVGF
GKTEVAVRAAFKAVQDGTQVAVLVPTTLLAQQHYSTFTQRMDGFGVNIAELSRFTTAADS
KKILAGLADGSVDIVIGTHRLLQTGVQWKNLGLIIVDEEQRFGVEHKEHIKALKSHVDVL
TMTATPIPRTLEMSLTGIREMTSITTAPEDRHPVLTYVGPQEDKQVAAAIRRELLRDGQV
FYIHNKVSDIEKVARNLRELVPEARVVVAHGQMSEQVLEQTVQGFWDREYDVMVCTTIVE
TGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRERAYAYFLYPKDKVLTETSYDRLAT
IAQNNDLGAGIAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVSEAVETFKGLMSG
ELIDATDKGPKEIRVDLPVDAHIPEAYINSERLRLEVYRKLAEARDDDHLRAAADEMVDR
FGPLPVEVEHLMAVARLRNQARAVGVADILTQGTRIKLHPVELPDSKQVRLKRLYAGANY
RAAAKTVQLPMPREGGAQRALNAPNLRDMELLQWVADVLTDLLDAPKISVAGSTAAEEKP
KKVFSVSE
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgccaccccgccggttctcggcgggcttctcaccaccgccctgacggatccg
aagctcaagggcctggtcacccacgtcggcgacgagcacctgcacatcacgggcatcgac
caatcccggtcgtgggccgcgggtgccatcgcccgcgagaccccgttgctcttggtcacg
gccaccggccacgaggcggaggatctgaccgccgagctcaaggccattctgggcgaggag
aaggttgcccacttcccggcctacgaaacgctgccgcacgagcgcctctcgccagccgcc
gacattgtgggccgccgctcgaaggtgctgtgggagatgccgcaggtcattgtcgccgcc
gcccgcgcggtgtgccagccggtgcttcccgcggtcgaaccgatccgcgtcgcgcttgag
gcggagtacgacttcgaggagctcacccgtgagctcacctacttcgcctacaagcacgtg
gacatggttgcggcgcgcggcgagttcgccacccgcggcggcatcatcgacgtgtttccc
accaccgcgctcaaccccgtgcgcatcgagttctggggcgacgaagtcaccgacatccgc
accttcgcggttgcggaccagcgcaccgtcgacgaggtcacctcggtcgagctccacccc
gcgcgccaactgcttatcgacgactccgtggccaccaaagccgacgaactcgcccgcaaa
tacccctccaaccccaccctgtccaaccttttggcgcgcgtgagcgagaaggtgcccgcg
gacggaatggaggcgcttatccccgcattgatcgacgccacgttctccgtgctgcccgag
ctcatgccggccggctcgatcgtgctcgtgacgaacccggagaaagtgaaggcccgcatc
gcggacttggaggccaccgaccaggagttcctcgaggccgggtgggaggccgccgccatg
ggcgccgagggcccgctggcggtggagggcctcgacgtctccgcctcgtcctaccgttcc
tacgagtcgctggagatctccgcgcgcaaggcgggcaacgcctggtggacgtttgcgccg
cccggcatgttcggcgccgacgacacactgacgctgccgctggaattcgaggccgctccc
gcgccgaagggtgacccgaaacagatcgagcagctctacgccacgctgaaactgcacctg
caaaaccacggccgcgccgcgttcgtcgccccggcgaagggcaccgtggagcgcatggcg
gagaggctgcgcgagcgcggcgtgtccgcgcgtgtggccacgcctgggctcgaacctgtc
gagggagcggtcaccctctaccaggcgctgtcccacgccggcctcgtcttcggcgggccg
aacctggtggtggtcaccgaaaccgacgtcacaggcaaccgcgtgggagacatcgctggc
gccaagcgccgcgccccgcgccgccgcaaccgggtcgatccgttggccctgcagccgggg
gatttcgtggtgcacgacacccacggcatcggcaagttcgtgaaaatggcggagcgcacc
atcaaggccggcgacgaggactcgcgccgcgaatacatcgtgctcgagtaccagccggcc
aagcgtggccaacccggggaccagctctgggtgcccatggagtcgctcgatttgctgagt
aagtacacgggcggcgagcagccgtcgctaagcaagatgggcggctcggactggaaaacc
accaagcgcaaggcgcgcgcggcggtgcgcgaaatcgcgggcgagcttgtggaactctac
gccaagcgtcaggcggcgcccggccacgcgttcgcgcccgacaccccgtggcagcacgag
atggaggacgcgttcccgtacgtggaaaccgaggaccagctcaacgccatcgaggctgtg
aaggaggacatggaaaagccggtgcccatggaccgcgtcatcgtcggcgacgtgggcttc
ggcaaaactgaggttgccgtgcgcgccgcgttcaaggcggtgcaggacggcacccaggtc
gcggtgctcgtgcccacgacgctgctcgcccagcagcactactcgacgttcacgcagcgc
atggacggtttcggagtgaacatcgcggagctgtcgcgtttcaccaccgccgccgattcc
aaaaagatcctcgccgggcttgccgacggctccgtcgatatcgtcatcggcacccaccgc
ctcctgcagaccggcgtgcaatggaagaacctcggcctgatcatcgtggacgaggagcag
cgcttcggcgtggagcacaaggagcacatcaaggcgctgaaatcccacgtggacgtgctc
accatgacggcgaccccgatcccgcgcaccctggagatgtcactcaccggcatccgcgag
atgacctcgatcaccaccgcgccggaggaccgccacccggtgctcacctacgtgggcccg
caggaagacaagcaggtcgccgctgcaatccgccgcgaactgcttcgcgacggccaggtc
ttctacatccacaacaaagtctccgacatcgaaaaagtagcccgtaacctgcgcgaactg
gtgcccgaggcgcgcgttgtggtcgcgcacggccagatgagcgagcaggtactcgagcag
accgtgcaggggttctgggaccgcgaatacgacgtgatggtgtgcaccaccatcgtggaa
accggcctggacattgctaacgccaacaccctgatcgtggagaacgcccagaacatgggc
ctgtcccagcttcaccagctgcgcgggcgcgtgggccgctcccgcgagcgcgcctacgct
tacttcctgtaccccaaggacaaggtgctcacggaaacgtcctacgaccgcctggccacc
atcgcccagaacaacgacctgggcgccggcatcgccgtggcgcagaaggacctggaaatg
cgcggcgccggcaacgttttgggtgccgagcagtccggccacatcgccggcgtgggcttc
gacatgtacgtccgactggtctcggaggcggtggaaaccttcaagggcctcatgagcggc
gagctcatcgacgccaccgacaaggggccgaaggaaatccgcgtcgacctgcccgtggac
gcccacatccccgaggcatacatcaactccgagcgcctccgcctggaggtgtaccgcaag
ctcgccgaagcgcgtgacgacgaccacctacgcgccgccgccgacgaaatggtcgaccgc
ttcggcccgctccccgtcgaggtggagcacctcatggcggtggcccgacttcgcaaccag
gcccgcgcggtgggggtcgccgacatcctcactcagggaacccgcatcaagttgcacccg
gtggagctgccggactcgaagcaggtgcgtctgaagcggctgtacgcgggggcgaactac
cgcgccgcagcgaagactgtgcagctgccgatgccgcgcgaggggggtgcgcagcgggca
ctgaacgcaccgaacctccgcgacatggagctgctccagtgggtcgccgacgtgctcacc
gacctgttggatgcccccaagatctccgtcgccggctccactgcggccgaggagaaaccg
aaaaaggtcttctctgtcagtgagtag
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