Corynebacterium jeddahense: CJEDD_04765
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Entry
CJEDD_04765 CDS
T08816
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cjh
Corynebacterium jeddahense
Pathway
cjh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cjh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CJEDD_04765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjh03400
]
CJEDD_04765
Enzymes [BR:
cjh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CJEDD_04765
DNA repair and recombination proteins [BR:
cjh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CJEDD_04765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WCZ38564
LinkDB
All DBs
Position
966478..968718
Genome browser
AA seq
746 aa
AA seq
DB search
MASGTKVRVDGRQLTVSSLDKVLYPATGTTKADVMRYYLAVADVLVPQARRRPVTRKRWP
EGVDKQSFFRKDLEDSAPEWIPTATIQHATSVNAYPLLDGSATLAWFAQVAALELHTPQW
RFGADGTPQHPDRLVLDLDPGPGVGLAQTAEVALECREILEDMGLRCVPVTSGSKGIHLY
AGLDGASDADAVTKVAKTLALALEKEHPDRVTATMAKAERAGKVFLDWSQNNGKKTTICP
YSLRGRERPTVAAPRTWDEIADPHLKHLEFEEVIARVEDGLDPIAELAEDKLATYRSMRN
KSKTGEPVPDSAPAPRSGEPIFVIGEHDASHLHWDFRLEHDGVLVSWAVPKGPPLETGVN
RLAVQTEDHPIEYAQFEGTIPKGQYGAGTVKIWDIGTCEIEKWRDREIIAVLRGRDGGGL
GGVPRRYALIRTEERNWLLKLMREQPEMGPMLPTMATRADIALAERDGTTFAFEMKWDGY
RIIADVGETVHLRSRGGKDYTALFPQASELKHMLSDGGTVDGELIALGPDGRPNFSALRH
EDPELRYMVFDVLRLGGRDLTGEPWEARRALLEGLTPTEHVAVPPATTGSFDHAWRAADE
LGLEGVVAKDVSSPYEPGERSRAWLKVKRALHQEVVVVGVRTGKRGISSLLVAVPDENGE
LRYAGRVGTGFSNAQLAEIGAKLRRVERKTPPIEVPDSDAKDAWWVTPKYVAEVQLAGAT
ADKKVRQASWRGWRDDKDPAEIRWEA
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccggcacgaaggtccgcgtcgacggccgccagctcacggtgagcagcctggac
aaggtgctttacccagcgacgggcaccacgaaagccgacgtcatgcgctattatctcgcc
gtcgccgacgtgctcgtcccgcaggcgcgcaggcggccggtgaccaggaagcggtggccg
gagggcgtcgataagcaaagcttctttcgcaaggacctcgaggactccgcacccgagtgg
atccccaccgccaccattcagcacgccacgagcgtcaacgcatatccgcttctcgacggc
tccgccaccctcgcgtggttcgcccaagtcgccgccctcgagctgcacacgccgcagtgg
cgcttcggcgcggacggcacaccgcaacacccggaccggctcgtgctcgacctcgacccc
ggccccggcgtcgggctcgcgcagacggccgaggtggcgctcgaatgccgcgagatcctc
gaggacatgggcctgcgctgcgtgcccgtaaccagcgggtcgaagggcatccacctctac
gcgggcctcgacggagcgagcgacgccgacgccgtgaccaaggtggccaagacgctcgcg
ctggcgctggagaaggagcacccggaccgggtcaccgcgacgatggcgaaggccgagcgc
gccggcaaggtgttcttggactggagccagaacaacggcaaaaagaccaccatctgcccg
tactcgctgcgcgggcgggagcgcccgaccgtcgcggcaccccggacgtgggacgagatc
gcggacccgcacctgaaacacctcgagttcgaggaggtcatcgcgcgcgtcgaggacggc
ctcgacccgatcgcggagctggccgaagacaagctggccacctaccgctccatgcgcaac
aagtcgaagaccggcgagcccgtgcccgacagcgcgcccgcgccccgcagcggcgagccg
atcttcgtcatcggcgagcacgacgcctcccacctgcactgggacttccgcctcgaacac
gacggcgtgctcgtctcctgggcggtgccgaagggcccgccgctggagaccggcgtcaac
cgcctcgccgtgcagactgaggaccacccgatcgaatacgcgcagttcgagggcaccatc
ccgaaggggcagtacggggcggggacggtgaagatctgggacatcggcacctgcgagatt
gagaagtggcgcgaccgggagatcatcgccgtgctgcgcggcagggacggcggcggcctc
ggcggggtgccgcggcgctacgcgctcatccggaccgaggagcgcaactggctgctcaag
ttgatgcgggagcagccggagatggggcccatgctgccgaccatggcaacgcgcgccgac
atcgcgctcgcggagcgcgacggcaccaccttcgcgttcgagatgaagtgggacggctac
cgcatcatcgccgacgtcggcgagaccgtgcacctgcgcagccgcgggggcaaggactac
accgcgctgttcccgcaggccagcgagctgaagcacatgcttagcgacggcggcaccgtc
gacggcgagctcatcgccctcgggcccgacggtaggcccaacttctcggcgctgcgtcac
gaggacccggaactgcgctacatggtcttcgacgtgctgcgtctcggcgggcgtgacctc
accggcgagccgtgggaagcgcgccgggcgctgctcgaggggctgacgccaaccgagcac
gtcgctgtcccgcccgcgaccaccggctccttcgaccacgcatggcgcgcagcggacgag
ctgggactcgagggcgtggtggccaaggacgtgagctcaccgtacgagccgggggaacgc
tctcgtgcgtggttgaaggtcaagcgcgcgctgcaccaagaggtggtcgtcgtcggggtg
cgcacgggcaagcgcgggatctcctcgctgctcgtggcggtgccggacgaaaacggggag
ctgcggtacgccgggcgcgtgggcaccgggttctccaacgcgcagctcgccgagatcggc
gcgaagctgcggcgggttgagcgcaagaccccgcctatcgaggtgccggactccgacgcg
aaagacgcctggtgggtgacaccgaagtacgtcgcggaggtacagctcgccggcgccacc
gcggacaaaaaagtgcgccaggcctcctggcggggctggcgcgacgacaaagacccggcg
gagatccgctgggaggcgtga
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