Campylobacter jejuni subsp. jejuni PT14: A911_03080
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Entry
A911_03080 CDS
T02264
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cjp
Campylobacter jejuni subsp. jejuni PT14
Pathway
cjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A911_03080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjp03019
]
A911_03080
03016 Transfer RNA biogenesis [BR:
cjp03016
]
A911_03080
Enzymes [BR:
cjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A911_03080
Messenger RNA biogenesis [BR:
cjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A911_03080
Transfer RNA biogenesis [BR:
cjp03016
]
Prokaryotic type
tRNA degradation factors
A911_03080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
Orthopox_F14
Motif
Other DBs
NCBI-ProteinID:
AFU42730
LinkDB
All DBs
Position
complement(592285..594219)
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AA seq
644 aa
AA seq
DB search
MKEFLNSLSYGISSHEVNNEFKQIFRELLTNHIIKEHKNKYYLNNGFAFGVLDISSKGTG
FLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPSAKVILVLKRANETSLMIT
KRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTILKIENENNNIIEVLGHIDDESVDEK
ISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDLRALPFCTIDPIHAKDFDDAIYF
DTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIYFPHIAIPMLPRPLSENICSLKPHL
DRLAYCFKITLNHENKVIKEELFEGIINSKRRFNYDEVDEILVQKPDLKELSWLYELFEI
TKNLRKMRLKNAFEFRTEELRMNLDENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKLI
DIGVFRNHLSADTRKIDKLLNELRELGIDVNFKPNLPELIRDIQALADELNLRAEVDKLI
IKAQKKAEYSSVNAGHFGLGFDKYSHFTSPIRRYSDLILHRLLKAKQKNDEKLFNYLLLN
IESTCENLSTLEREADKVAFDFMDRKFARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKG
ADIILYDTHANLLENVEVQIMEADIVMAKIYAKITQRLIKEENV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagaatttttaaacagtcttagttatggcattagctctcacgaagtaaacaatgaa
tttaaacaaattttcagagaacttttaactaatcatatcattaaagaacacaaaaacaaa
tactatcttaacaatggttttgcctttggagtacttgatatttcgagtaaaggcacaggt
tttttacaatgctttgatgaaagtttcaaaaaagatcttttgatagaaaacaaaaaccta
aaaggcgcaaactataaagatatagtcgcagtaaaacttctacctttaaagaaaaaacgc
cccagtgcaaaggtgattttggttctaaaaagagccaatgaaacctctttaatgatcacc
aaaaggtatggcgaagccgtgcttggaatgaatatcaaaacaggattaagcactgcctta
aaagcttctcaaaaatccttaaaagcactacctttagggacaattttaaaaatagaaaat
gaaaataacaatatcatagaagttttaggacatatcgatgatgaaagcgtagatgaaaaa
atctccttagctctttttaataaaaataacgaatttagcgacgcttgcatcaaagaagct
ctagcaaacggcgatagtgttgatgcgagtatgtatgaaaatcgcatggatttaagagcc
ttgcctttttgcaccatagatcctatacatgcaaaagattttgatgatgcgatttatttt
gacactcaaaaacgagaaatttatgtagctattgctgatgttagcgaatatgtttatgct
tatagtgctatagataaagaagcaagaaatcgtggattttctatttattttccacatatt
gctatacctatgctacctcgtcctttaagtgaaaatatctgttctttaaaacctcattta
gatcgcttagcgtattgttttaaaatcacactcaatcatgaaaataaagtcatcaaagaa
gaactttttgaaggtattatcaactcaaaacgccgttttaattacgatgaagttgatgaa
attttggtacaaaaacctgatttaaaagaactttcatggctttatgagctttttgaaatc
acaaaaaatttacgcaaaatgcgtcttaaaaatgcctttgaatttcgcaccgaagaatta
agaatgaatttagatgaaaatttaagtctaaaaagcacagtttttgaaaaagacacgcct
tcgcataatttgatcgaagattgtatgcttttagccaataaagccgcagcaaaactcata
gatataggcgtttttagaaatcacttaagtgctgatacaagaaaaatcgataagctttta
aatgaattacgcgaactcggaatcgatgtaaattttaaacccaatcttcctgagctcata
cgcgacatacaagctttagctgatgaattaaatttaagagcagaagtagataaactcatc
atcaaagcacaaaaaaaagcggaatactctagcgtaaatgcggggcattttggcttaggt
tttgataaatactcacattttacaagccctataagaaggtattctgatcttattttacac
agacttttaaaagccaaacaaaaaaacgatgaaaaactttttaattatctacttttaaac
atagaaagcacttgcgagaatcttagcacacttgaaagagaggcggataaggttgctttt
gattttatggatagaaaatttgctagatgggcagctaaaaatataggtaaaaaatttaaa
gctttagttgtgcaaaatgacggagtttgcatagctaaactagatgatgaaatcaaagga
gcggatataatcctttatgatacgcatgcgaatttactagaaaatgttgaagtgcaaatc
atggaagcggatatagttatggcaaaaatttatgctaaaatcacccaaagacttataaag
gaagaaaatgtatag
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