Campylobacter jejuni subsp. jejuni 35925B2: UC78_1043
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Entry
UC78_1043 CDS
T03745
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cjq
Campylobacter jejuni subsp. jejuni 35925B2
Pathway
cjq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cjq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UC78_1043 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjq03400
]
UC78_1043 (mfd)
Enzymes [BR:
cjq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UC78_1043 (mfd)
DNA repair and recombination proteins [BR:
cjq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UC78_1043 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
Josephin
Motif
Other DBs
NCBI-ProteinID:
AJP35528
LinkDB
All DBs
Position
complement(1012207..1015143)
Genome browser
AA seq
978 aa
AA seq
DB search
MQASFYEYLQNPKICELLLCKDEKQADLLAQVSRFKGLKTFVLPDFRAQFGDDLRAFSKE
LFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHIDKKQNFDLKCFEDEISRL
GYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEEIESIRYFDLQSQKSIPNELE
HFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSLGFWCIDDFFNYLELDFLACEKF
DINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFEFHKNKKITLLAKNEALFKALELED
TQNIHFVKSDLRLNLISPEELIISLNQKEKQKTRKKASLIIDELKNGDYIVHEDYGVGKF
LGLEMIVISGAKKEFVAIEYQNSDKLLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKL
KEKLKTKLLAIASEIVIMAAKRSLVQAKKITVDLSRQADFITSAGFIYTSDQEKACHEIL
QDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRF
DPFDIEVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALLSVECENLALVIIDEEHKFG
VKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDD
ALLKEAIARELRRGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKVQEEEML
KFENKEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFL
IEDKNAITKDALKRLISLESNSFLGAGSVLAYYDLEIRGGGNLLGVDQSGHIEQIGYSLY
LKMLEDELNALSKNEVDQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEV
YEIEGEIEDRFGKLDVYTKQFLSLIIIKILALNKFKSISNYEQNIQFTALNDEKELIKAK
SKDDDDILEAILTHLRKA
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcttcattttatgaatacctacaaaatccaaaaatttgtgaacttttgctttgt
aaagatgaaaaacaagcagatttacttgctcaagtttcacgatttaagggtttaaaaacc
tttgttttacctgattttagagcgcagtttggagatgatttaagggctttttccaaagaa
ctttttgatctttgcaagattttaaatgcttatcataaagaagaagaaaaaaaaatcctt
atttctcctttaaatactgttttaaaaaaacttccttcaaaaaaacatttgcaaaattat
catatcgataaaaaacaaaattttgatttgaaatgttttgaagatgaaatttcaagattg
ggatacgaatttgtagatatagttcaggataaaggtgaaatttcaattcgtgcggatatt
attgatattttttgtatcaatgaagaaaatcctattagaattttgctttttggcgaagag
attgaaagtataagatattttgatttgcaaagtcaaaagtctattcctaacgaactagaa
cattttgaaatttgtccttttttaaaatattttgacaaagaaaattatgaaatttttaag
gacaaattagaagattttcaaagtgatactttaatacatgatatcaattctttagggttt
tggtgtattgatgatttttttaattatttagaacttgattttttagcttgtgaaaagttt
gatattaacgaatatgaaaaagatataagttttgtgaatgcaaaaattttacctcaagct
aaaaaatttaaagaattgcaaagttcttacaataaagatttttttgaatttcataaaaat
aaaaaaatcacacttttagctaaaaacgaagctttgtttaaagctttggagcttgaagat
actcaaaatatccattttgtaaaaagtgatttaaggcttaatcttattagtcctgaagag
ctaatcatttctttaaatcaaaaagaaaaacaaaaaacaagaaaaaaagctagtttgatt
atagatgagcttaaaaatggggattatatagtacacgaagattacggagtgggtaaattt
ttaggtcttgagatgatagtgataagcggagcaaaaaaagagtttgttgctatagagtat
caaaattctgataagcttttattaccagtggaaaatctttatttaattgataaatatttg
ggcgtgagtggatctattccaagtttagacaaattaggtaaaacaagctttattaaactt
aaagaaaaattaaaaactaaacttttagccatagcttctgaaattgttattatggcagct
aaaagatctttagtgcaagcaaaaaaaatcacagtggatttaagtagacaagctgatttt
ataactagtgcgggttttatttatacaagcgatcaagagaaagcttgtcatgaaattttg
caagattttcaaagtggaaaagttatggataggcttttaagcggtgatgtgggttttgga
aaaactgaagtcgctatgaatgctatttatccagtagttaaaagtggattttgtgcattt
ttatttgcgcctacaactttgctttctcatcagcattataaaaccttaaaaaagcgtttt
gatccttttgatatagaggtttttaaactggatcgctttacaagtagtgcagaaaaaaaa
caagttttacaaaatttaaaagaaaataaagcttgtgtagttgtaggaactcatgcgctt
ttaagtgtagaatgtgaaaatttagcccttgttattattgatgaagagcataaatttgga
gtgaagcaaaaagaaaagcttaaagaaatcactcaaaattcacatattttatccatgtca
gcaacccctataccaagaagcttaaatcaagctttaagttctataaaatcttatagtgtt
ttgcaaactccaccagaagatagaatggatgtaagaacttttgtcaaagaaaatgatgac
gcacttttaaaagaagctatagcaagagagttaagacgtggtgggcaaattttttatatt
cataatcatattgcaagtatagagcagtgtaaaaaacatttattagaacttttttctact
ttgcgtattttgattttacattctaaaatcgatgccaaggtgcaagaagaagaaatgttg
aaatttgaaaacaaagaatatgatttgcttttaagtacctctatcgtagaaagtgggatt
gatttacctaatgcaaatactatcatagtagaaaaaagcgatcgttttggtatggctgat
ttgcatcaattgcgtgggcgtgtaggaagaagtgataagcaaggttattgttatttttta
atcgaagataaaaatgctatcacaaaagatgctttaaagcgtcttatttctttagaaagt
aattcttttttaggcgcaggttctgttttggcttattatgatcttgaaattcgtggcggt
ggaaatttattaggcgtagatcaaagtggacatatcgagcaaattggatatagtttatat
cttaaaatgttagaagatgaacttaatgctttaagtaaaaatgaagtggatcaaaaagaa
aataaacttgatttaaaactcaatgttaatgcctttttaaacagcgaacttatcagcgaa
gatcgcttaagattagaactttatagaagacttagcaagtgtgagcaagttcatgaggtt
tatgagatcgaaggtgaaattgaagatcgctttggaaaacttgatgtttatactaagcaa
tttttatctttgattatcattaaaattttagctttaaataaatttaaaagtattagcaat
tatgagcaaaatattcaatttactgctttaaatgatgaaaaagaactcatcaaggcaaaa
agcaaagacgatgatgatattttagaggcaattttgacgcatttaagaaaggcttaa
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