Campylobacter jejuni RM1221: CJE1228
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Entry
CJE1228 CDS
T00227
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cjr
Campylobacter jejuni RM1221
Pathway
cjr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cjr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJE1228 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjr03400
]
CJE1228 (mfd)
Enzymes [BR:
cjr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJE1228 (mfd)
DNA repair and recombination proteins [BR:
cjr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CJE1228 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
Josephin
Motif
Other DBs
NCBI-ProteinID:
AAW35550
LinkDB
All DBs
Position
complement(1141978..1144914)
Genome browser
AA seq
978 aa
AA seq
DB search
MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLPDFRAQFGDDLRAFSKE
LFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHIDKKQNFDLKCFEDEISRL
GYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEEIESIRYFDLQSQKSIPNELE
HFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSLGFWCIDDFFDYLELDFLACEKF
DINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFEFHKNKKITLLAKNEALFKALELED
TQNIHFVKSDLRLNLISPEELIISLNQKEKQKTRKKASLIIDELKNGDYIVHEDYGVGKF
LGLEMIVISGAKKEFVAIEYQNSDKLLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKL
KEKLKTKLLAIASEIVIMAAKRSLVQAKKITVDLNRQTDFIASAGFIYTSDQDKACHEIL
QDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRF
DPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALLSVECENLALVIIDEEHKFG
VKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDD
ALLKEAIARELRRGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEML
KFENKEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFL
IEDKNAITKDALKRLVSLESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLY
LKMLEDELNALSKNEVDQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEV
YEIEGEIEDRFGKLDIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAK
SKDDDDILEAILTHLRKA
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcttcattttatgaatacttacaaaatccaaaaatttgtgaactttttctttgt
aaagatgaaaaacaagcagatttactcgctcaagtttcacgatttaagggtttaaaaacc
tttgttttacctgattttagagcgcagtttggagatgatttaagggctttttctaaagaa
ctttttgatctttgtaagattttaaatgcttatcataaagaagaagaaaaaaaaatcctt
atttctcctttaaatactgttttaaaaaaacttccttcaaaaaaacatttacaaaattat
catatcgataaaaaacaaaattttgatttgaaatgttttgaagatgaaatttcaagattg
ggatacgaatttgtagatatagttcaggataaaggtgaaatttcaattcgtgcggatatt
attgatattttttgtatcaatgaagaaaatcctattagaattttactttttggcgaagag
attgaaagtataagatattttgatttgcaaagtcaaaagtctattcctaacgaactagaa
cattttgaaatttgtccttttttaaaatattttgacaaagaaaattatgaaatttttaag
gacaaattagaagattttcaaagcgatactttaatacatgatatcaattctttagggttt
tggtgtattgatgatttttttgattatttagaacttgattttttagcttgtgaaaagttt
gatattaatgaatatgaaaaagatataagttttgtgaatgcaaaaattttacctcaagct
aaaaaatttaaagaattgcaaagttcttacaataaagatttttttgaatttcataaaaat
aaaaaaatcacacttttagctaaaaacgaagctttatttaaagctttagagcttgaagat
actcaaaatatccattttgtaaaaagtgatttaaggcttaatcttattagtcctgaagag
ctaattatttctttaaatcaaaaagaaaaacaaaaaacaagaaaaaaagctagtttgatt
atagatgagcttaaaaatggggattatatagtacacgaagattatggggtaggtaaattt
ttaggtcttgagatgatagtgataagcggagcaaaaaaagagtttgttgctatagagtat
caaaattctgataagcttttattaccagtggaaaatctttatttgattgataaatatttg
ggcgtgagtggatctattccaagcttagataaactaggtaaaacaagctttattaaactt
aaagaaaaattaaagactaaacttttagccatagcttctgaaattgttattatggcggct
aaaagatctttggtgcaagcaaaaaaaattacagtggatttaaatagacagactgatttt
atagctagtgcgggttttatttatacaagcgatcaagataaagcctgtcatgaaattttg
caagattttcaaagtggaaaagtcatggataggcttttaagcggtgatgtgggttttgga
aaaacagaagtcgctatgaatgctatttatccagtagttaaaagtggattttgcgcattt
ttatttgcgcctacgactttgctttctcatcagcattataaaaccttaaaaaagcgtttt
gatccttttgatataaaggtttttaaactggatcgctttacaagtagtgcagaaaaaaaa
caagttttacaaaatttaaaagaaaataaagcttgtgtagttgtaggaactcatgcactt
ttaagtgtagaatgtgaaaatttagcccttgttattattgatgaagagcataaatttgga
gtgaagcaaaaagaaaagcttaaagaaatcactcaaaattcacatattttatccatgtca
gcaacccctataccaagaagcttaaatcaagctttaagttctataaaatcttatagtgtt
ttgcaaactccaccagaagatagaatggatgtaagaacttttgtcaaagaaaatgatgac
gcacttttaaaagaagctatagcaagagagttaagacgtggtgggcaaattttttatatt
cataatcatattgcaagtatagagcaatgtaaaaagcatttattagaacttttttctact
ttgcgtattttgattttacattctaaaatcgatgccaagatgcaagaagaagaaatgttg
aaatttgaaaacaaagaatatgatttgcttttaagtacctctatcgtagaaagtgggatt
gatttaccaaatgcaaatactatcatagtagaaaaaagcgatcgttttggcatggctgat
ttgcatcaattgcgtgggcgtgtaggaagaagtgataagcaaggttattgttatttttta
attgaagataaaaatgctatcacaaaagatgctttaaagcgtctagtttccttagaaagt
aattcttttttaggcgcaggttctattttggcttatcatgatcttgaaattcgtggcggt
ggaaatttattaggcgtagatcaaagtggacatattgagcaaattggatatagtttatat
cttaaaatgttagaagatgaacttaatgctttaagtaaaaatgaagtggatcaaaaagaa
aataaacttgatttaaaactcaatgttaatgcctttttaaacagcgaacttatcagcgaa
gatcgcttaagattagaactttatagaagacttagcaagtgtgagcaagttcatgaggtt
tatgagatcgaaggtgaaattgaagatcgctttggaaaacttgacatttatactaagcaa
tttttatctttgattactattaaaattttagctttaaataaatttaaaagcattagtaac
tatgagcaaaatattcaatttactgctttaaatgatgaaaaagaactcatcaaggcaaaa
agcaaagatgatgatgatattttagaggcaattttaacgcatttaagaaaggcttaa
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