Chryseobacterium joostei: EG359_16110
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Entry
EG359_16110 CDS
T06494
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cjt
Chryseobacterium joostei
Pathway
cjt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cjt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EG359_16110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjt03400
]
EG359_16110 (mfd)
Enzymes [BR:
cjt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EG359_16110 (mfd)
DNA repair and recombination proteins [BR:
cjt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EG359_16110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
AZB01044
UniProt:
A0A1N7I9S0
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Position
3507303..3510671
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKSINEKFLPDLLQKEFGKEIFSHLENNQHIAVKGSAGSSVSVFVAELFLVQKKHILY
LVDDKEDALYANTEMEDLLGKEKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGRS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYHFQQADFVSEPGEF
SVRGGIVDVFSYSYEKPYRITFFGNEVESIKTFDIETQLSVDKVKDFQLVSNMNFSVTGS
RVSLLQLLPKESYVVSRNGMVGMQKIRTFYEKSLEKYDTLNKDIAHRAPQELFISDQEFL
FDYKKFKTIDFGNAAIEGLKDIAEVKMEQLPQPSFHKNFELLIEDIEEKQNEGFDTWISF
STEKQKERLESIFEELEHELPFKSFKSELHEGFVDNGHKLLVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGREIVLSKLGSPTWKTLKQKTKAKVKQIAFDLIRLYAERKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATIDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVSYVNRFRTAKQKSETLDNLKNG
KVDIIIGTHQLASSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFSEEILRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFESLFENEEDR
QKLFKSVKDVNIDTDLELMLPDFYISNTEERLLLYQKLAEINNENDLHKFELELIDRFGA
LPKEAVNLLKSVSLKWLAADIGFEKIVMKNGVFLGYFPGNPQDKFYQTDRFRHIINYLTR
NPAEAQLKEKSGKDGNQLMMRKERVKNVDEVNVLLKAIIEHN
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaatccatcaacgaaaagtttcttcctgatctattgcaaaaagaatttgga
aaagagatttttagccatttagaaaataatcagcatattgctgtgaaaggaagtgccgga
tcttcagtatccgtctttgtagctgaactttttttggttcagaaaaaacatattctttat
ttggtagatgataaggaagatgcattatatgccaatacagaaatggaagacctgcttgga
aaagaaaaggtactttattttccggcaacccatcttgaaccttatcaggtagagaaaaca
cagaatgccaatttggttttaaggactgaggttttgaataaaatcaattccgggagatct
ccaaaggttattgtagcttatgccggagccttatctgaaaaggtattaaagaaagaagat
ttcaaggcaatttctcatcatataaaggtaggtgaccagctggattttgattttgttgat
gaattgctcaaccactatcactttcagcaggctgattttgtttctgaaccgggggaattc
tctgtaagaggaggaattgtggatgtattttcttattcctatgaaaagccatacaggatt
actttctttggtaatgaggtggaaagcattaaaacatttgatattgaaacccaactttca
gtagataaggtcaaggattttcaattggtttccaacatgaatttttctgtaaccggaagt
agagtgtcgttactgcagcttctacctaaggaaagctatgttgtttccaggaatggaatg
gtagggatgcagaagatcagaacattctacgaaaaatcccttgaaaaatatgatacctta
aataaggatattgcacatagagcgccacaagaactttttatttccgatcaggagttttta
tttgattataaaaaatttaagacaattgattttggaaatgcagctattgagggcttaaaa
gatattgcagaagttaaaatggaacagcttccacagccatctttccataaaaactttgaa
ctccttattgaagacatagaagaaaaacaaaatgaagggtttgatacctggatttctttt
tcaacggagaagcagaaagaaaggctggaatctatcttcgaagaacttgaacatgaactt
ccttttaaaagcttcaaatccgagctgcatgaaggattcgtggacaatggacataagctt
ttggtatatacggatcaccaaatttttgatcgttatcaaaggtataaggcaaaaaatact
tttgcaaagtcagaacaacttaccctaaaggatttgatgtctttaaagattggtgattat
attgcccatatcgatcatggaatcggtaagtttatggggttggtaaaagtaaataatgat
ggcaaaattcaggaatgttttaagctaacctataaaaatggagacctattatatgtaagt
attcattccctgcataagatttccaaatataatgggcctgatggacgagaaattgtattg
agtaaattaggttctccaacatggaagaccttaaaacaaaaaacaaaggctaaggtaaag
caaattgcatttgaccttatcagattatacgctgaaagaaaaaccgccaaaggttttgct
tatacaccggattcatatttgcagaatgagctggaggcaagctttatttatgaggatacc
cctgaccaggaaaaagcaaccattgatgtgaaaaaagatatggaagctgatactgtaatg
gacaggttagtttgtggtgacgtgggttttggtaaaacagaagtagcaatccgtgctgcc
tttaaagctgctacagatggaaaacaggttgcggtattagtaccaacaactattttggca
tttcaacattacagaagttttaaagaaagacttaaggactttccggtaaatgtttcctat
gtcaacagattcagaactgccaagcagaaatctgaaactctggataaccttaaaaacgga
aaggtggacattattattgggacccatcaattggcaagcagttcagttaaatttaaagac
ttaggattgttaattattgatgaagaacataagttcggagtttctgtgaaagataagctg
aagacccttaaaagtaatgtagatacacttacattaacagcaacaccaatccccagaaca
ctgcagttttcattaatggctgcaagagacttgtctgtaatcaagactccaccaccaaac
agacagcctgtagatacccagttgatcggattcagtgaagaaattcttcgtgatgctgtt
tcttatgaacttcaaagggacggacaggtttattttatcaataatagaattgaaaacctg
aaagatattgcagggcttattcagcgcttggttccggatgcaagggtgattacaggacat
gggcagatggaaggaaaacaacttgagaagaatgtactggattttatggaaggaaagtat
gacgttcttgtttccaccaccattgtagagagtggagtagacgttccgaatgccaatacg
attttcatcaatgatgcccaaagattcggaatggcggatctgcaccagatgagaggaaga
gtggggcgaagtaatagaaaagctttttgctaccttattaccccgccttatgatatgatg
acttctgatgccagaaaacgtttggaggcaattgaacagttttctgatttgggaagtggc
tttcagattgcaatgaaagatcttgagattcgtggtgcgggagatttattaggagcagaa
caaagtggatttatcaatgaaatggggtttgaaacctatcagaaactaatgcaggaggca
cttgaggaattgaaagatgatgctgattttgaaagtctgtttgaaaatgaagaagacagg
cagaagcttttcaaatctgtgaaagatgtcaatattgatacagatttagaattgatgttg
ccggatttctatatttccaatactgaggaaaggctgttgctgtatcagaaacttgctgaa
attaataatgaaaacgatctgcataagttcgaacttgaattaattgaccgttttggagcg
ttgcctaaggaggctgtaaacttattaaagagtgtttccttgaaatggcttgcagcagac
attggttttgagaagattgttatgaagaatggcgtgtttctgggatatttcccgggtaac
cctcaggataagttttatcagacagatcgatttaggcatatcattaattatttaactcgc
aacccagcagaagctcagcttaaggaaaaatctggtaaagatggaaatcagcttatgatg
agaaaagaaagagtgaaaaatgtagatgaagtcaatgttttattaaaagctataattgaa
cataattaa
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