Comamonas kerstersii: B5M06_00455
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Entry
B5M06_00455 CDS
T04758
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cke
Comamonas kerstersii
Pathway
cke03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B5M06_00455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cke03400
]
B5M06_00455
Enzymes [BR:
cke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B5M06_00455
DNA repair and recombination proteins [BR:
cke03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B5M06_00455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_25
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AQZ99656
UniProt:
A0A1V0BI95
LinkDB
All DBs
Position
98970..102446
Genome browser
AA seq
1158 aa
AA seq
DB search
MDLPKLSPGKRFALPMPVGSADALLLARLAEREKSAGRLTVIVTADASDAQRLIDEMAFF
APELRTALFPDWETLPYDTFSPHQDLISERLATLWRIRQRDHESGADVVLVPATTALYRL
APPSFLAGYTFEFKQGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPMGSP
VPYRVDLFDDEIDTIRTFDPDTQRSQDTVPQVRLLPGREFPMDEDARAKFRHRWRELLEG
DPTRSRIYKDMGAGVATAGIEYYLPLFFDDTATVFDYLGEDATLVLHGELEPAFQRFWQD
TKERYRLVQGDPERPALPPETLFLNAEQFYACAKPYPQLALRPKVDDVPDSAWFQTLPDL
SVVRGAEDPLQRLQAHVRSAGRRVLVLAESDGRRESLLDFLRSSHLNPPAFDSLAEFQGE
DSEPLGIATSNLMRGFAWVETGIDFVTETELFASTSGSTRRRKKQEQVSDVDALIKDLSE
LKVGDPVVHSQHGIGRYHGLVNMDVGQKNEDGTPALQEFLHLEYAKNAVLYVPVSQLHHI
SRYTGVTPESAPLHNLGSNQWEKAKRKAAEQVRDAAAELLNIYARRAAREGHAFRLNVQD
YEQFAQDFGFEETADQKAAIHAVIHDMLSPQPMDRLVCGDVGFGKTEVALRAAFVAAMGG
KQVAFLAPTTLLAEQHYQTLVDRFSKWPIRVAEVSRFRTTKEVNAALQGLGEGSVDIVVG
THKLLSSSVKFKDLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEG
LRDLSVIATAPQRRLAIKTFVRSESQGVIREAVLREFKRGGQVYFLHNEVETIENRRQAL
EAILPEARIAVAHGQMPERELERVMRDFVAQRYNVLLCSTIIETGIDVPTANTIVISRAD
KFGLAQLHQLRGRVGRSHHQAYAYLMVPDVEGLTKQAQQRLEAIQQMEELGSGFYLAMHD
LEIRGAGEVLGENQSGNMMEIGFQLYNEMLAEAVRSLKNGKEPDLLSPMAATTEINLHAP
ALLPNDYCGDVQLRLSFYKKLATAKTTDQIDHLLEEIVDRFGKLPPQAQTLIDTHRLRVL
SEPYGVAKVDAAPGVINITFKPNPPIDPMQIISLIQKNKHIKLAGNDKLRIERELPDPKA
RAQMVRDVLRSLGTPLKA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcccaaactctcgcccggtaaacgttttgccctgcccatgcccgttggcagt
gccgatgcactgctgctggcacgtcttgccgaacgcgaaaaaagcgctggccgcctgacg
gtcatcgtcactgctgatgccagcgatgcgcagcgcctgatcgacgaaatggccttcttc
gcgcccgagctgcgcacggccctgttccctgactgggaaaccctgccctacgacactttc
tctccacaccaggatctgatcagtgagcgcctggctacgctgtggcgcattcgccagcgt
gaccatgaaagcggtgccgacgtggtgctggtgcctgcgaccacggcgctgtaccgactg
gcccctccgtcttttctggcgggctacacctttgagttcaagcaaggccagaagctggac
gaagccaagctcaaggcccagctgacgctggcgggctaccagcatgtctcgcaagtggtc
agccacggcgaatatgccgtgcgcggtgggctgattgacctcttccccatggggtcgccc
gtgccctaccgtgtggatctgttcgatgacgagatcgacaccatccgcacctttgacccg
gacacccagcgcagccaggacaccgtgccccaggtacgcctgctgcccgggcgcgaattc
cccatggatgaggatgcccgcgccaaattccgccaccgctggcgcgaactgctggaaggc
gaccccacacgcagccgcatctacaaggacatgggtgcgggcgttgccacggccggtatt
gagtactacctgccgctgttctttgacgacaccgccacggtgttcgactacctgggcgag
gatgccaccctggtgctgcatggcgagctggagcctgccttccagcgcttctggcaggac
accaaggaacgctatcgcctggtgcagggcgacccggagcgccctgcactgccacccgaa
accctgtttctgaacgccgagcagttctacgcctgcgccaagccctacccacagctggcc
ctgcgccccaaggtagacgatgtgccagacagcgcctggttccagaccctgcctgacctg
tccgtggtacgcggtgcggaagacccgctgcagcgcctgcaggcccatgtgcgcagcgca
ggccgccgtgtgctggtgctggctgaaagcgatggtcgccgtgaaagcctgctggacttt
ctgcgctcttcgcacctgaacccgcctgcatttgactcgctggcggaatttcagggtgaa
gacagcgaacccctgggcattgccacctccaacctgatgcgcggctttgcgtgggtggaa
acgggcattgactttgttaccgagaccgagctgtttgcctctacctccggcagcacacgc
cggcgcaagaagcaggaacaggtcagcgatgtggacgcgctgatcaaggacttgtccgag
ctgaaagtcggcgacccggtcgtacacagccagcatggcatcggccgctaccacggcctg
gtgaacatggatgtgggccagaagaacgaagacggcacgcctgcgctgcaggagtttctg
cacctggaatacgccaagaatgccgtgctctatgtgcccgtcagccagttgcaccacatc
agccgctacaccggcgtcacccccgaatctgcgcccttgcacaacctgggcagcaaccag
tgggaaaaagccaagcgcaaggctgccgagcaggtgcgcgatgcagccgccgagctgctc
aacatctacgcccgccgcgctgcgcgtgaaggccatgccttccgtctgaatgtgcaggac
tacgagcagttcgcccaggactttggctttgaagaaacggctgaccagaaggcggccatc
catgccgtgattcacgacatgctcagcccccagcccatggaccgtctggtctgcggcgat
gtaggctttggcaagaccgaggtcgccctgcgcgccgcctttgtggctgccatgggcggc
aagcaggtggctttccttgcccccaccaccctgctggccgagcagcactaccagacgctg
gtggaccgcttttccaagtggcccatccgggtggccgaagtctcgcgttttcgcaccacc
aaggaggtcaatgccgcactccaggggctgggtgaaggctcggtggacattgtggttggc
acgcacaagctgctgtccagctccgtgaagttcaaggatctgggcctgctcatcattgac
gaggaacaccggtttggcgtgcgccacaaggaggccatgaaggccatgcgtgccgaggtg
gatgtgctcacgctcacagccacccccattccgcgcaccatgggcatggcgctggaaggc
ctgcgcgatctgtccgtgattgccaccgcaccgcagcgccgcctggccatcaagaccttt
gtgcgcagcgaaagccagggcgtcatccgcgaagccgtgctgcgtgagttcaagcgtggc
ggccaggtctactttctgcacaacgaggtggagaccatcgaaaaccgccgccaggcgctg
gaagccatcctgcccgaggcacgcattgccgtggcccacggccagatgcccgagcgcgag
ctggagcgcgtcatgcgtgactttgtggcccagcgctacaacgtgctgctgtgctccacc
atcatcgaaaccggtattgacgtacccacggccaacaccatcgtcatcagccgtgccgac
aagttcggtctggcccagctgcaccagctgcgtggccgcgtgggccgcagccaccaccag
gcctatgcctacctgatggtgccggacgtagaaggcctgaccaagcaggcccagcagcgc
ctggaagccatccagcagatggaagagctgggcagtggcttttacctggccatgcatgac
ctggaaattcgcggcgcgggtgaagtgctgggcgaaaaccagagtggcaacatgatggaa
atcggctttcagctctacaacgaaatgctggccgaagccgtgcgcagcctcaagaacggc
aaggagcctgatctgctctcgcccatggcagccaccacggaaatcaatctgcatgcgcca
gccctgctgcccaacgactactgtggcgatgtgcagctgcgcctgtcgttctacaaaaag
ctggccaccgccaagaccacagaccagattgaccacctgctcgaagaaatcgtggaccgc
tttggcaagctgcccccacaggcgcagaccctgatcgacacccaccgcctgcgtgtgctg
tctgagccctatggcgttgccaaggtggatgcagcgccaggggtgatcaacatcaccttc
aagcccaatccgccgattgacccgatgcagatcatcagcctgattcagaagaacaagcac
atcaaactggcaggcaatgacaagctgcgcattgagcgcgagctgcccgaccccaaggcc
cgcgcccagatggtgcgcgatgtgctgcgcagcctgggcacaccgctgaaggcttga
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