Corynebacterium kefirresidentii: I6I12_08615
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Entry
I6I12_08615 CDS
T07267
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ckf
Corynebacterium kefirresidentii
Pathway
ckf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ckf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6I12_08615 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ckf03400
]
I6I12_08615 (mfd)
Enzymes [BR:
ckf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6I12_08615 (mfd)
DNA repair and recombination proteins [BR:
ckf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6I12_08615 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QQN47197
LinkDB
All DBs
Position
complement(1795967..1799608)
Genome browser
AA seq
1213 aa
AA seq
DB search
MATPMLAGLLKVAASDPKLKGMISHVGEDLHITGLDQSRPWALGTLAHHAPVLVVTATSR
EAEDLSAELTAMLGEKVAMFPAWETLPHERLSPGVDIIGRRAQVLHNLDNVQVIVTAARG
LSQPILKEVEGRAPIHIEEDHEYDFDEVVRELEFRAYKHVDMVAKRGEYATRGGIIDIFP
TTLDYPVRVEFWGDEITDIRQFSVADQRTIPEIEVGRVDIFPARELPITDAIAQRAADLA
VKHPGNPALVELLTKVSEHIPAEGMEALLPVLSDAPMITLPEFLRPTTHVVMVGPEKIRR
RVADLEKTDAEFLAAGWEAAAMGADGPLATEGLDTEASSYRSYESLEVSIGESDLPLWTF
SPPGMLAAPEEETLPLEFEPGPTPRGNIEEIDAMMAQLLAHTNAGGRAAFIAPAQGAIKR
MVDRFAEKGIRTKVATPGWEPTAGEVTLYQALSHAGLVFPKVKKPKDAEALPLVVVTETD
LTGNRVGDIAEAKRRPAKRRNKVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSR
REYIVLEYTPSKRGQPADQLWVPMDSLDLLSKYTGGESPHLSKMGGSDWKNTKKKARAAV
REIAGELVELYAKRQAAPGHQFAPDNPWQAEMEDNFPFVETEDQMLAIDAVKQDMESTVP
MDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQHFDTFSERMTGFPVKIE
VLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEH
IKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAA
IRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARVVVAHGQMNEEVLEQTVQGFWDRE
YDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGAT
LTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGE
AVETFKSLARGEAPTVTDEGPKEIRIDLPVDAHIPEAYIDSERLRLEVYRKLAASQDDDD
LKAVIEEMEDRFGPLPQEVLRLLSVARLRHQARRAGVSDITVQGTRIKFHPVELPDSKQV
RLKRLYPGSSFRAAAKAINVPFPKAGRNVTSPKLRDTELIQWAADFLSALFDVESITVTG
EKSAAGSVISVGE
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccaatgctggccggcttgctcaaggtagcagcctcggaccccaagcttaag
ggcatgatttctcatgtgggggaagacctccacatcacaggtttggatcagtctcggccg
tgggccttgggaactttggcccatcacgccccggtgctggtggtgaccgccaccagccgc
gaggcggaagaccttagcgcagagcttacggcgatgctgggggaaaaggtggccatgttt
ccggcatgggagacactgccgcacgagcgtttgagccctggcgtcgacatcatcggccgc
cgcgcccaggttttgcacaacttggacaatgtgcaggtcatcgtcaccgctgcccgcggg
ctgtcccagcctatcctcaaggaagtggaaggtcgtgctcccattcacatcgaagaagac
catgagtatgacttcgatgaggtggtccgtgagcttgagttccgcgcctataaacacgta
gacatggtggccaagcgcggcgagtacgccactcgaggtggcattatcgatattttcccc
accacgctggactatccggtccgcgttgagttctggggcgatgagattaccgatattcgc
caattttccgtagctgaccagcgcaccatcccggaaatcgaggtcggccgcgtagatatt
ttccctgcccgcgagcttcctattacggatgctattgctcagcgtgcggccgaccttgcc
gtcaagcaccccggtaatcccgccttggtggagcttttgaccaaggtgagcgagcacatt
ccggccgaaggcatggaggcgcttttgcccgtgctttccgacgcccccatgatcaccctc
cccgaattcctccgccccaccactcacgtggtgatggttggcccggagaagattcgccgc
cgcgtcgcggatttagaaaagaccgatgctgaattcctggccgctggctgggaagccgcg
gccatgggtgctgatggcccattggccaccgaaggactcgataccgaggcctcgagctac
cgctcctatgaatcgctcgaggtttccatcggcgagtccgacctgccgctgtggactttc
tccccaccgggaatgcttgccgccccagaagaggagaccctcccactcgaattcgagcca
gggcccaccccgcgcggcaatatcgaagaaatcgatgccatgatggcccaactcctcgcg
cataccaacgccgggggccgtgcggccttcatcgctccggcacagggcgctatcaagcgc
atggtggatcgcttcgcggaaaagggcatccgcactaaggttgctacccctggctgggag
cccaccgccggagaagtcaccctctatcaggcgctaagccatgctggattggtgttcccc
aaggtgaaaaagcccaaggacgccgaggccctcccgttggtcgttgtcaccgaaaccgat
ctgaccggcaaccgcgtaggcgatatcgccgaagcgaagcggcgccccgccaagcgccgc
aataaggtcgatccgcttgccctaaaacagggcgattttgtggtgcacgaaacccacggc
attggcaaattcttaaagatggccgaacgcaccatccagtccggcgatgagaccagccgc
cgcgaatatatcgtgctcgaatacacaccctcgaaacgtggccagcccgccgaccagctc
tgggtccccatggactctctggatttgctgagcaagtacaccggcggcgaatcgccccac
ctgtctaagatgggcggctccgattggaagaacaccaagaagaaggcgcgcgccgcagta
cgcgaaattgcgggcgaactcgttgagctttatgccaagcgacaagcagcacccggccac
caattcgcccctgacaatccgtggcaggcggagatggaggataatttccccttcgtcgaa
accgaagaccagatgcttgcaatcgacgccgtcaaacaagacatggaatctacggtgccg
atggaccgcgtcgtcgtcggcgatgtgggctatggcaagaccgaggtggccatccgcgct
gctttcaaggccgtacaagacggcatgcaggtggccgttttggtgcctaccacgctgttg
gcgcagcagcactttgatactttcagcgagcgcatgaccggcttccctgtcaagatcgag
gtgctctcgcgctttacctcgaagaaagaagccaaagacatctttaagggattggccgat
ggcagcgtcgatatcgtcgttggcacgcatcgcctcctgcagaccggtgtgcactggaag
aaccttggtctcatcgtcgtagacgaggagcagcgctttggtgtggagcacaaggaacat
atcaaggctcttaaagccagcgtggacgtgctcaccatgtccgctacacctattccgcgc
accttggagatgtccatggcgggcattcgcgagatgtctaccatccttaccccgccggaa
gaccgccaccccgtgctgacctacgtcggtgcctatgaagacaagcaggtcgccgcggcc
atccgccgcgagctgctgcgcgatggtcaaaccttcttcatccacaataaggtctctgat
attgaaaagaaggcccgcgagctgcgtgacttggtacctgaggctcgcgtcgtcgtcgcg
cacggccagatgaacgaggaagtgctggagcagaccgtccaaggcttctgggaccgcgaa
tatgatgtccttgtgtgtaccaccatcgtggaaaccggcctggacattgctaatgccaat
accctcattgtggaaaacgcccaccatatgggcctgtcccagctacaccagttgcgtggg
cgcgtgggtcgttcccgtgagcgcggctatgcctacttcctgtatccgaagggcgctacg
cttacggaaacctcttatgaccgcctagccaccatcgcccagaacaacgaccttggtgca
ggcatggcagtagccatgaaggatttggagatgcgtggtgccggtaacgtgctcggtgcc
cagcagtccggccacattgccggcgttggcttcgacctttacgtccgccttgttggcgag
gcggtagaaaccttcaaatctctcgctcgcggcgaagctcctaccgtgacggatgagggg
ccaaaagaaatccgtatcgatctccccgtggacgcgcatatcccggaggcttatatcgat
tccgagcgcctgcgcctagaggtctaccgcaagcttgcagcctcgcaagatgacgatgat
ctcaaggccgttattgaggaaatggaagaccgctttggcccgctgccacaggaggtctta
cgcttactgtccgtcgcccgcctgcgtcaccaagcgcgccgcgccggggtatcggatatt
actgtgcagggcactcgtatcaagttccacccagtggagctgccggattccaagcaggtg
cgcctcaagcgtttgtatccaggatccagcttccgcgcggcggcgaaggccatcaacgtg
ccattccccaaggcggggcgcaatgtcacctcgcccaagctgcgcgacacggagcttatt
cagtgggcggcggactttttgagcgcgcttttcgatgtcgaatcgatcaccgtcaccggc
gagaaatccgccgcaggtagcgtcatcagcgtaggggaatag
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