Caldicellulosiruptor acetigenus I77R1B: Calkr_0596
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Entry
Calkr_0596 CDS
T01356
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cki
Caldicellulosiruptor acetigenus I77R1B
Pathway
cki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Calkr_0596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cki03400
]
Calkr_0596
Enzymes [BR:
cki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Calkr_0596
DNA repair and recombination proteins [BR:
cki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Calkr_0596
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
MotCF
betaPIX_CC
Motif
Other DBs
NCBI-ProteinID:
ADQ40141
UniProt:
E4SA00
LinkDB
All DBs
Position
645883..649308
Genome browser
AA seq
1141 aa
AA seq
DB search
MLKVLERLDGFKTLEEIVAKKSLPVVVTGVGEMGKALVVKSLCEKFNKKALFITTQRAKL
EWERRFKNLFSSVVSLQERENPYVASFAKSRDSEITRIEQFVKIFEDGFDVLILTAQNLF
EKYTDLKFDCILLTEGLDIQLETLIEKLLTFGYERVKTVEKKGQFSQKGGIVDIYPVAST
YPVRIEFFGDTIDTIRLFDVETQKSFEKIDSIKIYKAIEWDLQEDFSEGLKHIKDDYKKM
KSKLKEESRKNLEETFKEVVEGIRLDVERLYPYYYQQFLSVIDIFSECLIFVDEYSQVYN
SLKAFEQEMREMFSDLLEKGFVLPRMADCYYTVDKILQKFSSTIILQTFASSIKEIELRE
IISFNFFRELPTYNAQKEVLIDDLKYYMSKDYTINIFTGSRTSLEDLEEALLKENIQFFE
LDEPEIEKPGVYLIAKSAEKGIEIHDIKWVCLSFFHLEKKKETEAKKRAKSKKDAFYTIE
DLKPGDFVVHRTHGIGKFLGFEKITVEGTTKEYVKLEYANSSYLYVPTTNLDVIEKYIGT
DDVQPKLSKLGSQEWQKQKQKVRKSLEIVAKDLVELYAKRQLHKGFKFSKDTLWQKEFEE
KFPYTETEGQLQAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVL
VPTTILAQQHYMTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLS
SDVKFKDLGLLIIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSV
IEDPPEDRYPVQTFVLEYNERIIKEAILREISRGGQVFYLYNRIKDIQEVAAKLQNLVGD
SIKVACAHGQMPEEELERVLLDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLA
QLYQLRGRVGRSNRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRG
AGSVLGKLQHGHINSVGYDMYIRLLSEEIRRLKGENIQPEIEPQIDVKVSAFISSSYIDD
EKERINMYKKISSIESKDDVNDIYDELIDRFGDVPKEVDNLIKIAYLKCLCKKAGIISIL
QLQECLFKLQFFNNEMLLKAMNKFLQQGLSCSQNKDDCLQLFIKNNWLDTLIAILEDLQE
S
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaggttttagaaaggcttgatggctttaaaactcttgaagagattgttgccaaa
aaaagccttcctgttgttgtcacaggcgttggtgagatggggaaggcacttgtggtcaag
tctttatgtgaaaaatttaacaaaaaggcgttgtttataacaactcaaagagcaaaactt
gagtgggaaagaaggtttaaaaacctttttagtagtgtagtgagcctgcaggaaagagaa
aatccatatgtagcttcttttgcaaagagcagggattctgaaattaccaggatagagcag
tttgtaaagatttttgaggatggttttgatgttctcatattaactgcccagaaccttttt
gaaaagtacacagatttgaagtttgattgcattcttctcacagaaggtcttgacattcag
cttgaaacccttatagaaaagcttttaacattcgggtatgaaagagtaaaaactgtggaa
aagaaaggacagttttctcaaaaaggtggcatagttgatatatatcctgtggcaagcaca
tatcctgtgaggattgagttttttggagataccatagatacaattagactttttgatgtt
gaaacccaaaaatcttttgaaaaaatagatagtattaaaatttacaaggcaattgagtgg
gatttgcaagaagacttttcagagggcttaaaacatataaaagatgactataaaaaaatg
aaatctaagctgaaagaagagagcagaaagaatttagaagagactttcaaagaagtggta
gaaggaattcggctggatgttgaaaggctgtatccatattactatcagcaatttttatca
gttattgatatttttagtgaatgtcttatttttgttgacgagtatagtcaagtctacaac
agcttgaaagcttttgaacaagagatgcgagagatgttttcagaccttttagaaaaaggg
tttgtgcttccgaggatggcagactgttattatactgttgataagattttgcaaaagttc
tcaagcaccataattcttcaaacatttgcgtcttctattaaagagattgaactgagagag
attatatctttcaacttctttcgagaacttcccacctacaatgctcagaaagaggtttta
attgatgatttgaagtattatatgtcaaaagactataccataaacatctttacaggaagt
cgaacatcccttgaagatttagaagaggcacttttaaaagaaaatatacagttttttgag
cttgatgagccagaaatagaaaaaccaggagtatatctaatagccaaatctgccgaaaag
ggcattgagatacatgatatcaaatgggtttgcctttcatttttccatcttgaaaagaaa
aaggaaacagaagcaaaaaagagggcaaaatctaaaaaggatgctttttatacaattgag
gatttaaaaccaggtgattttgtcgttcacagaacacatggtattggcaaattcttggga
tttgaaaagattacagttgagggtacaacaaaagaatatgtaaaacttgaatatgctaac
tcttcttatctatatgttccaactacaaacttagatgtgattgaaaagtatattggaaca
gacgatgtacagccaaaactatctaagcttgggtcacaagagtggcaaaagcaaaaacaa
aaggtaagaaaatctcttgagattgtagcaaaagacctggttgagctttatgcaaaaaga
cagcttcacaaaggttttaaattttcaaaagatacgctttggcagaaagagtttgaagaa
aagtttccgtatacagagacagaaggacagcttcaggcaattgaagagattaaaagggat
atggaaagtgaaaaaccgatggacaggatactttgcggagatgttgggtatggcaagact
gaggttgcaatgagagcagcattcaaagctgtgatggattcaaaacaggtggcagtactt
gttcccacaacaattcttgcacagcagcattacatgacattttctgcacgaatgaaagat
tttccagtaacaattgaggttctctcacgtttaaaaaatgagacacaacaaaagaagata
ataaaaggtttaaaagaaggcacaattgacattgtgattggtacgcacaggctactttcg
agcgatgttaagttcaaagaccttggtcttttgattattgatgaagaacacaagtttggc
gtggaagcaaaagagaagataaaaaagctaaaaacaaatgttgatgttctgaccctcacc
gcaacacctataccaaggacacttaacatggcacttttaggaatcagggatttgagcgtg
attgaagacccgcctgaagataggtatcctgtacagacatttgtgcttgagtacaatgaa
aggataataaaagaagctattttaagagaaatttcaagaggaggtcaggtattttatctt
tacaataggataaaagatatacaagaggtggctgctaaacttcaaaatcttgtgggcgac
agtataaaagttgcatgtgctcacgggcaaatgcccgaagaagagttggagagagtgtta
cttgattttattgaaggcaggtacgatgtgcttgtgtgcacaacaatcatagagtctggg
gttgacatgccaaacgtcaatacacttattgtcgaagacagcgacagacttggtcttgcc
cagctttatcagctaagaggaagagtgggtcggtctaacaggctggcatatgcatatttt
acatttagaaaagacaaggtgctctccgaacaggcacagaagagacttgctgcaataaag
gagtttacagaacttgggtcgggttttaaaattgccatgagggaccttgagataagaggt
gcggggtctgtgcttggaaagcttcagcacggtcatataaacagtgttggatatgatatg
tatataagacttctttcggaagagataaggaggcttaaaggcgaaaatatacagccggag
attgaacctcagatagatgtaaaggtaagcgcgtttattagcagcagttacattgacgat
gaaaaagagagaattaatatgtacaaaaagatttcgtcaatcgagtcaaaagatgatgta
aacgatatttatgatgagctgatagacaggtttggggatgtgcccaaagaagttgacaat
ttaataaagattgcgtacttgaaatgtttgtgtaaaaaggcagggataataagtattttg
cagcttcaagaatgtctttttaaacttcagttttttaacaatgaaatgcttttaaaagca
atgaacaagtttttgcagcaaggactttcatgttcgcaaaacaaggacgactgcttacag
ctctttataaagaataactggcttgataccctgatagctattttagaagatttacaagaa
agttaa
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