Caldicellulosiruptor kronotskyensis: Calkro_1943
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Entry
Calkro_1943 CDS
T01357
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn03410
Base excision repair
ckn03430
Mismatch repair
ckn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Calkro_1943
03430 Mismatch repair
Calkro_1943
03440 Homologous recombination
Calkro_1943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ckn03400
]
Calkro_1943
DNA repair and recombination proteins [BR:
ckn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Calkro_1943
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Calkro_1943
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Calkro_1943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF4416
Motif
Other DBs
NCBI-ProteinID:
ADQ46787
UniProt:
E4SGB2
LinkDB
All DBs
Position
complement(2123512..2125908)
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AA seq
798 aa
AA seq
DB search
MIFQKKRWILKDNSNIEDMDIEIDGRKIKPQIVKVLNNRGIQEKEEIEKFLNPSLKNLHN
PFLLPDMKEAVKIINQAILCKSRVLIYGDYDCDGVTSTYLLYSVLKNFLPTIYYIPNRFK
DGYGLNFDVLKKLEDKFDLLITVDTGISAQNEVKYLKEKGKTVIITDHHEPKEVLPEADA
VINPKRKDSIYPFRDLAGVGVAFKLLHALKNSGINLKLSEYLDVVAIGTIADVMPLVDEN
RVLAKFGLKVLKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRISDANLAV
SLLLEQDIIKAESIAKKLDEENRKRQEIEEKTIKEAQSLINKNKGILRKKIFVLSNGSWH
AGVVGIASSKITEKYYRPSLLLTLADEGVLKGSGRSIKGFNLFEALRNCAEILLKFGGHE
HAAGLSLPVDNVDKLDEILNSIAQDYHFMIFKPAIEVDLVLSLNEIDDELIDQVYLLEPF
GVGNPEPTFLIKNLVVENFRFMGDGNKYYKFFAGNSTKYDVVCFSNLEDEDELISMKKVD
IVCKLEKNLFNSVRKNQFNIIDICENVSFGVIKDLYNNLKAVRNNCLSFQRYEVKRGSLQ
DIEEKRCVFVAFWPHIVLNFLKFLKGEDVESEFFEFLNKQGRIIQHQSSLKEVYFDDIFA
TRLDKLNAIVNEADLVVALDMPSYQYVKNFYQDINTVLIDFDNKFDEFSLHINEECVNVY
KTLRDCEFISYNFSGIYESDPFLKVVKLLFIIQMFEETGLILAEVTHEGIEVKEFFKTQE
KVNLKSTKVYSFYRTLKV
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgatttttcagaaaaagagatggattttgaaagataacagcaacattgaagatatggat
attgaaattgatggtaggaaaataaagcctcaaattgtaaaggttttaaacaatagaggt
atacaggaaaaggaggaaatagagaagtttttaaatccttcacttaaaaatcttcacaat
ccattccttttgcctgatatgaaagaagcagttaaaattataaaccaggctattttgtgc
aaaagtagagtgctcatatatggtgattacgactgcgatggagttacaagtacatatttg
ctttattcagttttgaaaaattttttgccaacaatatattatattcccaatagatttaaa
gatggatatgggctcaactttgatgttttaaagaaactggaagacaagtttgacctgctt
attactgttgacacggggattagcgcacaaaatgaggtgaagtatctcaaagaaaaaggg
aaaacagttataataacagaccatcatgaaccgaaagaagttttgccagaggctgatgct
gtgataaatcccaaaagaaaagatagtatttatccgttcagggatttggcgggtgttggg
gtggcgtttaaacttttacacgcactcaaaaactcagggataaatcttaaactatctgag
tatcttgatgttgttgcgattggaacaattgcagatgtaatgcctcttgttgatgagaat
agggttttagcaaagtttgggcttaaagttttaaaaaatacgaaaaatgtcggactcaag
aaacttatagaagtagctggactttcgtcaaaagaggaactgaaaccctatgatgtgtcg
ttcataattggtccgaggctgaacgctgctgggcggatttctgatgcgaatttagctgtg
tcacttcttttagagcaggatattataaaggcagagagtattgcaaaaaagcttgacgaa
gagaatagaaaacgtcaggaaatagaagaaaagacaattaaagaagctcagagcttaatt
aataaaaataaaggtattttaagaaagaagatatttgttcttagcaatggttcatggcat
gctggagttgttgggatagcttcttcaaaaatcacagaaaaatattacagaccttctctt
ttgctgacacttgctgacgagggtgttttaaaaggttcaggaaggtcaattaaaggtttt
aacttgtttgaagcactcagaaactgtgcagaaattttgctcaagtttggtggtcatgaa
catgcagcaggtctttcacttcctgttgacaatgttgacaaacttgacgagattttaaac
tcaattgcacaggattatcattttatgatattcaagccggcaattgaagttgaccttgtg
ctctctttaaatgagattgatgatgaacttatcgaccaggtttatcttttagaaccgttt
ggtgttggtaaccctgaaccaacttttttgataaaaaatcttgttgtagagaattttagg
ttcatgggtgatggcaacaaatactataaattttttgctggcaactcaacaaaatatgat
gttgtgtgcttttccaacttggaagatgaagatgagctgatttcaatgaaaaaagtagat
attgtttgcaaactcgaaaagaatctttttaacagtgtgagaaaaaatcagttcaatatt
attgatatttgcgaaaatgttagttttggagttataaaggacttatataataatttgaag
gctgttagaaataactgcttaagttttcagagatatgaagtaaaaagaggcagcttgcag
gatatagaagaaaaaaggtgtgtttttgtagctttttggccgcacattgttctcaatttt
cttaaatttttaaaaggagaagacgtggagagtgaattttttgaatttttaaataaacaa
ggtaggataattcagcatcaaagtagtctaaaggaggtatattttgacgatatctttgca
acaaggcttgataagctaaatgctattgtgaacgaggcagatttggttgttgctcttgat
atgccttcttatcagtatgtcaaaaacttttatcaagatattaacactgttttgattgac
tttgacaacaaatttgatgaattttcacttcacataaatgaagaatgtgttaatgtttat
aaaacattgagggactgtgagtttatatcttacaatttttcgggtatatatgaatcagac
ccatttttgaaggtggtaaaattgctctttattatccaaatgtttgaagagacaggtctc
attttagcagaggttactcacgaaggaattgaggtaaaagagttttttaaaacacaagaa
aaagtgaacctaaaatctacaaaggtgtacagcttttacagaacgttgaaagtataa
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