Chitinimonas koreensis: H9L41_06765
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Entry
H9L41_06765 CDS
T08620
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cks
Chitinimonas koreensis
Pathway
cks03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H9L41_06765 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cks03400
]
H9L41_06765 (ligD)
Enzymes [BR:
cks01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H9L41_06765 (ligD)
DNA repair and recombination proteins [BR:
cks03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H9L41_06765 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DRY_EERY
Motif
Other DBs
NCBI-ProteinID:
QNM97954
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All DBs
Position
1573504..1576089
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AA seq
861 aa
AA seq
DB search
MGLEKYRRKRDFARTPEPEGEERPSGPRLAYVIQQHAARKLHYDFRLELDGTLKSWAVPR
GPSLDPAQKRLAVEVEDHPLDYGGFEGVIPARQYGAGTVMLWDRGEWLPDGDPAEGYRRG
RLEFRLRGEKLAGGWTLVRIKAKDEERQTPWLLIKRADAEAREGPEAEITERLTRSVLSR
RSLAQIAARSEAEPPAEAPAGSSAMPACRAPMPDFIEPQLASLVERAPHGGDWLAELKYD
GYRILARVDRGEVQIRTRNRKDWTARMPELARALGGLGDVSAWLDGEVVALDARGEISFQ
ALQQAFPKPGERSRPARLVYLPFDLPWLDGEDLRGLPQRERKRRLEALLAALPADAPVRY
SAHLDEAVEAAFRHACLHGQEGLILKRADAPYAAGRSSHWLKLKCGRRQEFVIGGYTDPK
GSRIGFGALLVGYYAHGRLRYAGRVGTGFDHGLLTQLTARLQALRRADSPFDGGPAERGP
TERGPTERGPDGFHWVEPECVAEVRFAGWTEAGLLRQAAFVGLREDKPARAVTDEVAVAP
PEADAADRPVKGMAAKGAAAAAAAAPDQVAGVAISHPDRVLFADVGLGKIGLARYYAAVA
ERLLPQLHDRPLSLVRCPRGPAQPCFFQKHFGEAFPATLLAVEVEEGSGESARYMVANDL
AAVIGLVQMGVLEFHTWGARRDRLDRPDRMIFDLDPAPDLPWQRVVEAAGLVRALLEELG
LACFLKTTGGKGLHVETPLTRHHDWDTVKGLSQRIARHLAVLMPDRFVATAAKQRRTGRI
FIDWLRNAEGATAVAAYSVRARPGAPVAVPIEWDELADGVRADRFDVRATLERLRRQRQD
PWAGYEAARRRITAEMTARLD
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgggactggagaaataccgccgcaagcgcgatttcgcccgcacgcccgaacccgagggc
gaagaacggccgtccggcccgcggctggcctacgtgatccagcagcacgccgcccgcaag
ctgcactacgacttccggctcgaactcgacggcacgctgaagagctgggcggtgccgcgc
gggccgagcctggacccggcgcagaagcggctggcggtcgaggtcgaggaccatccgctc
gactacggcggcttcgagggcgtgatcccggcgcgtcagtacggcgccggcacggtgatg
ctgtgggaccgcggcgaatggctgcccgacggcgacccggccgagggctaccggcgcggc
cggctcgaattccggctgcgcggcgagaagctggccggcggctggacgctggtgcgcatc
aaggcgaaggacgaggagcggcagacgccctggctgctgatcaagcgggccgatgccgag
gcgcgcgaggggccggaagccgagatcaccgaacggctgacccgcagcgtgctgagccgg
cgcagcctggcccagatcgccgcgcgcagcgaggcggagccgccggccgaagcgccggcc
gggtcatcggccatgcctgcctgccgtgcgccgatgcccgacttcatcgagccgcagctg
gccagcctggtcgagcgcgcgccgcacggcggcgactggctggccgagctcaagtacgac
ggctaccgcatcctggcgcgcgtcgaccgcggcgaagtgcagatccggacgcgcaaccgc
aaggactggaccgcgcgcatgccggagctggcgcgcgcgctgggcgggctcggcgacgtc
tcggcctggctcgacggcgaggtggtggcgctcgacgcgcgcggcgagatcagcttccag
gcgctgcagcaggcgtttcccaagcccggcgagcgcagccggccggcgcggctggtctac
ctgccgttcgacctgccctggctcgacggcgaggacctgcgcggcctgccgcagcgcgag
cgcaagcggcggctcgaagcgctgctggccgccttgccggccgacgccccggtgcgctac
agcgcccacctcgacgaagcggtcgaggcggccttccgccatgcctgcctgcacggccag
gaagggctgatcctcaagcgcgccgacgcgccctatgcggccggccgttcgagccactgg
ctcaagctcaagtgcggccggcggcaggaattcgtgatcggcggctacaccgatccgaag
ggcagccggatcggcttcggcgcgctgctggtcggctactacgcgcacggccggctgcgc
tatgccgggcgggtcggcaccggtttcgaccacggtttgctgacgcagctgacggcgcgc
ttgcaggccttacgccgcgccgattcgccgttcgacggcggcccggccgaacgcggcccg
accgaacgcggtccgaccgaacgcggtccggatggattccactgggtcgaacccgagtgc
gtcgccgaagtccgcttcgccggctggaccgaggccggcctgctgcgccaggcggctttc
gtcggcctgcgcgaggacaagccggcgcgcgccgtgacggacgaggtggccgtggcgccg
ccggaagccgatgcggcggaccggccggtgaagggcatggcggcgaagggcgccgccgcg
gcggccgctgccgcgcccgaccaggtggccggcgtcgccatcagccatcccgaccgcgtg
ctgttcgccgacgtcggcctcggcaagatcggcctggcgcgctactacgccgcggtggcc
gaacggctgctgccgcaattgcacgaccggccgctgagcctggtgcgctgcccgcgcggg
ccggcgcagccctgcttcttccagaagcatttcggcgaggccttccccgctacgctgctg
gcggtcgaggtggaggagggaagcggcgaatcggcccgctacatggtggccaacgacctg
gccgcggtgatcggcctggtgcagatgggcgtgctcgaattccacacctggggcgcccgg
cgcgaccggctcgatcggcccgaccgcatgatcttcgatctcgacccggcgccggacctg
ccgtggcagcgggtggtcgaggcggccggcctggtgcgcgcgctgctggaagagctgggc
ctggcctgcttcctcaagaccaccggcggcaagggtctgcacgtcgagacgccgctgacg
cgccaccacgactgggacacggtcaagggcctgtcgcagcgcatcgcccgccacctggca
gtgctgatgccggaccgcttcgtcgccacggccgccaagcagcggcgcaccggccgcatc
ttcatcgactggctgcgcaatgccgagggcgccaccgcggtggccgcctactcggtgcgg
gcgcggccgggcgcgccggtggcggtgccgatcgaatgggacgagctggccgacggcgtg
cgcgccgaccggttcgacgtgcgcgccacgctcgaacggctacgccggcagcggcaagac
ccgtgggccggctacgaggcggcgcgccggcgcatcacggcggagatgacggcccggctc
gattga
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