KEGG   Chitinimonas koreensis: H9L41_06765
Entry
H9L41_06765       CDS       T08620                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cks  Chitinimonas koreensis
Pathway
cks03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cks00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H9L41_06765 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cks03400]
    H9L41_06765 (ligD)
Enzymes [BR:cks01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H9L41_06765 (ligD)
DNA repair and recombination proteins [BR:cks03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H9L41_06765 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DRY_EERY
Other DBs
NCBI-ProteinID: QNM97954
LinkDB
Position
1573504..1576089
AA seq 861 aa
MGLEKYRRKRDFARTPEPEGEERPSGPRLAYVIQQHAARKLHYDFRLELDGTLKSWAVPR
GPSLDPAQKRLAVEVEDHPLDYGGFEGVIPARQYGAGTVMLWDRGEWLPDGDPAEGYRRG
RLEFRLRGEKLAGGWTLVRIKAKDEERQTPWLLIKRADAEAREGPEAEITERLTRSVLSR
RSLAQIAARSEAEPPAEAPAGSSAMPACRAPMPDFIEPQLASLVERAPHGGDWLAELKYD
GYRILARVDRGEVQIRTRNRKDWTARMPELARALGGLGDVSAWLDGEVVALDARGEISFQ
ALQQAFPKPGERSRPARLVYLPFDLPWLDGEDLRGLPQRERKRRLEALLAALPADAPVRY
SAHLDEAVEAAFRHACLHGQEGLILKRADAPYAAGRSSHWLKLKCGRRQEFVIGGYTDPK
GSRIGFGALLVGYYAHGRLRYAGRVGTGFDHGLLTQLTARLQALRRADSPFDGGPAERGP
TERGPTERGPDGFHWVEPECVAEVRFAGWTEAGLLRQAAFVGLREDKPARAVTDEVAVAP
PEADAADRPVKGMAAKGAAAAAAAAPDQVAGVAISHPDRVLFADVGLGKIGLARYYAAVA
ERLLPQLHDRPLSLVRCPRGPAQPCFFQKHFGEAFPATLLAVEVEEGSGESARYMVANDL
AAVIGLVQMGVLEFHTWGARRDRLDRPDRMIFDLDPAPDLPWQRVVEAAGLVRALLEELG
LACFLKTTGGKGLHVETPLTRHHDWDTVKGLSQRIARHLAVLMPDRFVATAAKQRRTGRI
FIDWLRNAEGATAVAAYSVRARPGAPVAVPIEWDELADGVRADRFDVRATLERLRRQRQD
PWAGYEAARRRITAEMTARLD
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgggactggagaaataccgccgcaagcgcgatttcgcccgcacgcccgaacccgagggc
gaagaacggccgtccggcccgcggctggcctacgtgatccagcagcacgccgcccgcaag
ctgcactacgacttccggctcgaactcgacggcacgctgaagagctgggcggtgccgcgc
gggccgagcctggacccggcgcagaagcggctggcggtcgaggtcgaggaccatccgctc
gactacggcggcttcgagggcgtgatcccggcgcgtcagtacggcgccggcacggtgatg
ctgtgggaccgcggcgaatggctgcccgacggcgacccggccgagggctaccggcgcggc
cggctcgaattccggctgcgcggcgagaagctggccggcggctggacgctggtgcgcatc
aaggcgaaggacgaggagcggcagacgccctggctgctgatcaagcgggccgatgccgag
gcgcgcgaggggccggaagccgagatcaccgaacggctgacccgcagcgtgctgagccgg
cgcagcctggcccagatcgccgcgcgcagcgaggcggagccgccggccgaagcgccggcc
gggtcatcggccatgcctgcctgccgtgcgccgatgcccgacttcatcgagccgcagctg
gccagcctggtcgagcgcgcgccgcacggcggcgactggctggccgagctcaagtacgac
ggctaccgcatcctggcgcgcgtcgaccgcggcgaagtgcagatccggacgcgcaaccgc
aaggactggaccgcgcgcatgccggagctggcgcgcgcgctgggcgggctcggcgacgtc
tcggcctggctcgacggcgaggtggtggcgctcgacgcgcgcggcgagatcagcttccag
gcgctgcagcaggcgtttcccaagcccggcgagcgcagccggccggcgcggctggtctac
ctgccgttcgacctgccctggctcgacggcgaggacctgcgcggcctgccgcagcgcgag
cgcaagcggcggctcgaagcgctgctggccgccttgccggccgacgccccggtgcgctac
agcgcccacctcgacgaagcggtcgaggcggccttccgccatgcctgcctgcacggccag
gaagggctgatcctcaagcgcgccgacgcgccctatgcggccggccgttcgagccactgg
ctcaagctcaagtgcggccggcggcaggaattcgtgatcggcggctacaccgatccgaag
ggcagccggatcggcttcggcgcgctgctggtcggctactacgcgcacggccggctgcgc
tatgccgggcgggtcggcaccggtttcgaccacggtttgctgacgcagctgacggcgcgc
ttgcaggccttacgccgcgccgattcgccgttcgacggcggcccggccgaacgcggcccg
accgaacgcggtccgaccgaacgcggtccggatggattccactgggtcgaacccgagtgc
gtcgccgaagtccgcttcgccggctggaccgaggccggcctgctgcgccaggcggctttc
gtcggcctgcgcgaggacaagccggcgcgcgccgtgacggacgaggtggccgtggcgccg
ccggaagccgatgcggcggaccggccggtgaagggcatggcggcgaagggcgccgccgcg
gcggccgctgccgcgcccgaccaggtggccggcgtcgccatcagccatcccgaccgcgtg
ctgttcgccgacgtcggcctcggcaagatcggcctggcgcgctactacgccgcggtggcc
gaacggctgctgccgcaattgcacgaccggccgctgagcctggtgcgctgcccgcgcggg
ccggcgcagccctgcttcttccagaagcatttcggcgaggccttccccgctacgctgctg
gcggtcgaggtggaggagggaagcggcgaatcggcccgctacatggtggccaacgacctg
gccgcggtgatcggcctggtgcagatgggcgtgctcgaattccacacctggggcgcccgg
cgcgaccggctcgatcggcccgaccgcatgatcttcgatctcgacccggcgccggacctg
ccgtggcagcgggtggtcgaggcggccggcctggtgcgcgcgctgctggaagagctgggc
ctggcctgcttcctcaagaccaccggcggcaagggtctgcacgtcgagacgccgctgacg
cgccaccacgactgggacacggtcaagggcctgtcgcagcgcatcgcccgccacctggca
gtgctgatgccggaccgcttcgtcgccacggccgccaagcagcggcgcaccggccgcatc
ttcatcgactggctgcgcaatgccgagggcgccaccgcggtggccgcctactcggtgcgg
gcgcggccgggcgcgccggtggcggtgccgatcgaatgggacgagctggccgacggcgtg
cgcgccgaccggttcgacgtgcgcgccacgctcgaacggctacgccggcagcggcaagac
ccgtgggccggctacgaggcggcgcgccggcgcatcacggcggagatgacggcccggctc
gattga

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