Corynebacterium kalinowskii: CKALI_08070
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Entry
CKALI_08070 CDS
T07849
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ckw
Corynebacterium kalinowskii
Pathway
ckw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ckw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKALI_08070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ckw03400
]
CKALI_08070 (mfd)
Enzymes [BR:
ckw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKALI_08070 (mfd)
DNA repair and recombination proteins [BR:
ckw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CKALI_08070 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QGU02475
UniProt:
A0A6B8VU52
LinkDB
All DBs
Position
complement(1680300..1683908)
Genome browser
AA seq
1202 aa
AA seq
DB search
MKKSEAPMLAGLLKVAGRDPKIKGLLENVGESRLHITAIDQARPWVIGALAQRAPILAVV
ATGREAEDLTAELKALLGDKVAWFPSWETLPHERMSPGLDTVGKRAEVLHSLDQLQVVVT
AARGFCQPLLSTAEGRAALTIEKGKDYEFSELAEALVFRAYNHVDMVARKGDFATRGGII
DVFPTTAEHPVRLEFWGDEVTDIRAFAVADQRTIQDLDYEAIDIFPARELLITEDIAQRA
GELAVQHPGNASLVELLTKISDRQSADGMEALIPALVDTPMVTLPELMPDTTHVVLMNPE
KIRTRIADLQATDAEFLAAGWEAAAMGADGPIAAAGLDLEASSYRSFESLMVGNNVWTIA
PPGMIFASEEETLPLAFDAAPAPRGDLKEIEKLMALLLAHINGGGRAAYVAPAAGAIKRM
TERFKENGISVKVATPGWQPSEGEVTLYQALAHNGLVFPGPKLVVVTETDLTGNRVGDIA
GAKRRPARKRNRVDPLALKPGDLVVHETHGIGRFLKMTERTIKAGDETSRREYLVLEYAP
SRRGGPADQLYVPMDALDLLSKYVGGEKPTLSKMGGSDWKNTKKKARAAVREIAGELVEL
YAKRQSAPGHPFGPDSPWQHEMEDNFPYVETEDQMLAIDAVKTDMEKPVPMDRVIVGDVG
YGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLSTFEERMDGFPVTIRGLSRFTPGRE
SKETLKGLADGTVDIVIGTHRLLQTGVHWKNLGLVIVDEEQRFGVEHKEHIKALRTAVDV
LTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAQEEKQVAAAIRRELLRDGQ
VFYVHNKVSSIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIV
ETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLA
TIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMAD
GKVLDATDKEPREIRVDLPVDAHIPESYINSERLRLEVYRKLAASTSEADLVLAVEEMED
RYGPIPVEVSRLLAVARLRHVMRSAGLTDIATQGTRIKIHPVELPDSKQVRLKRLFPGAT
YRAAAQAIQVSFPKAGNRISDPQLRDVELVQWLADFISKMFDVATVSVTGGQSENKRVIS
IS
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaagtccgaagcgcccatgctggcgggactgctaaaggttgcgggccgggaccct
aagatcaagggtctactggagaacgtcggcgagtcgcgcctgcacatcacagcgatcgat
caggcgagaccgtgggtgatcggtgccctcgcacagcgggcgccgatccttgccgtcgtg
gccaccggccgtgaggcggaagacctcactgcggagctcaaagccctgttgggggacaag
gttgcgtggttccctagctgggaaaccttgccgcacgagcggatgagccccggcctggac
accgtgggcaagcgcgcagaggtcctgcatagcctggatcagctccaagttgtggtgacg
gcggcgcggggtttttgccaacctctcttatcgacggctgaaggtcgcgcagcgctcact
attgaaaagggtaaggattacgaattttccgaactcgcggaagctctcgtgttccgtgcc
tacaaccacgtggacatggtggcgcgcaagggtgattttgctacccgtggtggcattatc
gatgtgttcccaaccactgctgagcatcccgtccgcctggagttttggggtgacgaggtc
accgatattcgtgcttttgcggtcgcggatcagcgcacgatccaggatcttgactacgaa
gcgatcgacatatttccagcccgcgaactcctgattactgaggacatcgcgcagcgggca
ggcgagctggccgtgcagcatccggggaatgcctcattggtggaattgctcaccaagatt
tcggatcggcagtcggctgacggcatggaggctttgataccggcgctcgtggacactccg
atggtgaccttgccggaactgatgccggacactacccacgtggtgctcatgaacccggag
aagatccgaacccgcatcgcagatctgcaggctacggatgccgaattcttagcggcaggt
tgggaagccgccgccatgggcgcagatgggccgattgccgccgctggacttgatctagaa
gccagctcttaccgatctttcgaatccctcatggtcggcaacaacgtctggactattgct
cctccgggcatgattttcgcctccgaggaggaaacgcttccgctcgcatttgatgcagct
cccgcaccgcgcggtgatttgaaggaaatcgaaaagctgatggcgttgctgctcgcacat
atcaacggcggtggcagggcggcctatgtcgcgccggccgctggcgcaatcaagcgcatg
acagagcgtttcaaagaaaacggtatctctgtcaaggtggcgacccccggctggcagccg
tcagagggtgaggtgaccctgtatcaggcgctggcacacaacggactggtttttcctggc
ccaaagctggttgtggtcaccgaaactgatctgacgggtaaccgcgtgggtgatatcgcc
ggcgcgaagcgtcgtcccgcccgcaagcgcaaccgcgtcgatccgctcgccctcaagccc
ggtgacctggtggtacatgaaacgcacggcatcggtcgcttcctcaagatgacggagcgc
accatcaaagctggtgacgaaacgtcccggcgcgagtacctggtgcttgagtatgcaccg
tcgcgtcgcggtggccccgctgaccagctctatgtgccaatggatgcactggacttgctg
tcaaagtacgttggcggcgagaaaccgacgctatccaagatgggtggctcggactggaag
aacaccaagaagaaggcccgcgccgcagtgcgcgagatcgccggtgaactcgtcgagctg
tatgccaaacgccaatccgcgccaggccacccgttcggtccggattcgccttggcaacac
gagatggaagacaattttccgtacgtggagaccgaagaccagatgctggctattgatgcc
gtgaagacggacatggaaaagccagtgccgatggaccgcgtgatcgtcggcgacgttggt
tatggcaagacggaagtggcggtgcgcgctgccttcaaggccgttcaagacggtaagcag
gtcgctgtgctcgtaccgacgacgctcctcgcgcagcagcacttgtctacttttgaagag
cgcatggatggttttccggtcacgatccgtggcctatcccgctttacacctggccgcgag
tcaaaggaaacgctgaaggggcttgccgacggcaccgtcgacatcgtcatcggcacccac
cgtttgctacagaccggcgtgcactggaagaacctcggtctggtcatcgtggacgaggag
cagcgcttcggtgtcgagcacaaggaacacatcaaggcgctgcgcaccgcggtggatgtg
ctcacgatgtccgcaaccccgatcccgcgcacgctggagatgtctatggccggcatccga
gaaatgtccacgattctcactccgccagaagatcgccaccctgtgctgacctatgtgggc
gcgcaggaggaaaagcaggtcgcagcggcgattcggcgcgaactgctgcgcgacggtcaa
gtgttctacgtacacaataaggtttcatccatcgaaaagaaggcccgggaaatccgtgac
ttggttcccgaagctcgcgtcgtggttgctcatggccagatgtccgaggaactgttggaa
caaaccgttcagggtttctgggaccgcgagtacgacgtcctggtgtgtacgaccattgtg
gaaaccggcttggatatctccaatgccaacacactgatcgtcgaaaatgcccatcacatg
ggtctgtcacagctgcaccagctgcgtggtcgagtggggcgctcccgcgagcgcggatac
gcctacttcttgtaccctaagggcgcaacgctaactgagaactcgtatgaccgcctggct
accattgcccagaacaacgacctgggcgccggtatggcggtggcgatgaaggacctggag
atgcgtggcgccggcaatgtgctgggcgccgagcagtccggacacatcgctggagtgggc
tttgacctgtatgttcgcctggtgggggaggccgtggaggcttttcgggctatggctgac
ggcaaggttcttgacgctaccgacaaagaaccgcgcgagatccgcgttgacttgcccgtc
gacgcccacattccggaaagctacatcaactccgagcgtctgcgcttggaggtctaccgc
aagctcgcagcttcgacgtcagaagctgacctggtcctggctgtggaggaaatggaagac
cgttacggtccgattccggtggaggtttcgcgtttgcttgccgtcgctcgcttgcgtcac
gtcatgcgttccgcgggactgacagatatcgcgacacagggaactcgtatcaagattcat
ccggttgagctgccggactcgaagcaggtgcgtctcaagcgactattccctggtgccacc
taccgcgccgcagctcaggcgatccaggtgtccttcccgaaggctggtaaccggatctcc
gacccgcaattgcgagacgtggaattggttcagtggctcgccgacttcatttccaagatg
ttcgacgtggccactgtgtctgtaactggcggtcaatcggagaataagcgggtaatttcg
atcagctaa
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