Chryseobacterium lactis: EG342_02710
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Entry
EG342_02710 CDS
T06580
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
clac
Chryseobacterium lactis
Pathway
clac03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
clac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EG342_02710 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clac03400
]
EG342_02710 (ligD)
Enzymes [BR:
clac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EG342_02710 (ligD)
DNA repair and recombination proteins [BR:
clac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EG342_02710 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_OB_2
DUF4362
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AZA80889
UniProt:
A0A3G6RWG0
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All DBs
Position
619662..621542
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AA seq
626 aa
AA seq
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MLAKLSEEAFDDKDWVFEIKWDGYRAIADLSHNDPLFYSRNGISFLSKFDTIATDFERQK
YQMILDGEVVAYDHEGRPNFQQLQQIGDNPNPALVYQVFDILWLNGHSTEELPLIQRKEL
LKEALVETDVIKYCDHISEKGIDFFKQMKKMKLEGMIAKRADSVYVENHRTSDWLKIKFN
NTDEAIICGFTEPRGSRQSFGALILGKYIDGQLTYCGHTGTGFNNSSLKELYEKFHKLIV
KTSPFETIPKTNMPVTWIKPELVCEIKYSEITKDGIYRHPVFVAIREDKEPDEIKDSGHN
TLTEKSKDMKAKTSSKKTETHEKENEITLNQHKVKLTNQDKIYFPKDGISKGDVIDYYQS
VATYILPYLKNRPLSLNRFPNGIEEQGFYQKDAGEHIPEWIKTTQVYSESNDKYIDYIYC
NDKATLAYLNNLGCIDLNPWNSSLPDLDHPDYLVLDLDPSKKNSFDDVIETALQVNEILT
SIKIKGYCKTSGSTGIHIYIPMGGKYDFDQVKDFAHILMKQVNEKLPKITTLERSLQKRD
SNKIYLDYLQNRTGQTLASAYSLRPKEGASVSMPLDWNELKPGIKPTDFNIHNSLERIKE
KGDLFKPVLGKGIDMMKALEFLQNID
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaaagctttcagaggaagcatttgacgataaagactgggtttttgaaataaaa
tgggatggatatcgtgccattgcggatctgagtcataatgatccgctcttctattcccga
aacgggatttcattcttatctaaatttgatactatcgcaacagattttgaacggcagaag
tatcaaatgatcctggacggtgaagttgtagcgtacgaccacgagggaagacctaatttc
cagcagttgcaacaaatcggggataaccccaatccagctcttgtttatcaggtttttgat
attttatggctgaatggccattctacggaagaacttcctttaattcaacgaaaagaactt
ttaaaagaggcattggttgaaactgatgttatcaaatattgcgaccatatttctgaaaaa
ggcattgatttttttaaacaaatgaaaaaaatgaagctggaaggaatgattgccaagcga
gccgacagtgtatatgtagaaaaccacagaaccagtgactggcttaaaattaaattcaac
aacaccgacgaagccattatctgtggattcaccgaaccacgaggttcacgacaaagtttc
ggagccttaattttagggaaatatattgatgggcaactaacttattgcggacataccgga
actggattcaataacagctcattgaaggaactttatgaaaaatttcataagctcattgtg
aaaacttccccttttgaaacaattcccaaaaccaatatgcctgtaacctggattaaaccg
gaactggtttgtgaaatcaaatattcagagattaccaaagatggcatctacagacaccct
gtctttgttgctattcgggaagataaagaacctgatgaaataaaggattccggccacaat
acactcaccgaaaaatctaaagatatgaaagccaaaacttcatcaaaaaaaacagaaact
catgaaaaagaaaatgagatcacattaaaccaacataaggtaaaactcaccaatcaggat
aaaatctattttccgaaagacggtattagcaagggtgatgtgatagactactatcaatcg
gttgcaacctatatcctaccctatctgaaaaatcggccgctatctctcaatcgtttccct
aatggtattgaagaacaaggtttttaccagaaagatgcgggagagcatattccggaatgg
atcaaaacaacacaggtgtattctgaatctaatgataaatacatcgactatatttactgc
aatgataaagcaacgttagcatatctgaacaatctgggatgtattgaccttaatccctgg
aacagttcgttaccagatctggatcatccagattatttggttttagatctggatccgtcg
aaaaaaaatagttttgacgacgttattgaaacggctcttcaggtaaatgagattttaacc
tcaattaaaataaaaggatattgcaagacttccggaagtacaggaatccacatttacatt
ccgatgggtggaaaatatgattttgaccaggtgaaagattttgcacatatcctcatgaaa
caggtgaatgaaaagcttccaaagattactacactggaaagaagtttacaaaagagagat
tctaataaaatctacctggactaccttcaaaacagaacgggacagactttagccagtgct
tatagtctaagaccaaaagaaggtgcttcagtatccatgcctttggattggaatgaactt
aaaccgggaataaaaccaacagattttaatattcataacagtctggaaaggattaaagag
aaaggagatttgtttaaaccggttctgggtaagggaatagatatgatgaaggcactggaa
ttcctgcagaatattgattaa
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