Chryseobacterium lactis: EG342_07090
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Entry
EG342_07090 CDS
T06580
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
clac
Chryseobacterium lactis
Pathway
clac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EG342_07090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clac03400
]
EG342_07090 (mfd)
Enzymes [BR:
clac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EG342_07090 (mfd)
DNA repair and recombination proteins [BR:
clac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EG342_07090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
Latarcin
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AZA81690
UniProt:
A0A3G6RQV6
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All DBs
Position
1642330..1645689
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AA seq
1119 aa
AA seq
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MQLKSINEKFLPDLMQKEFGKEIFNQLEDNQHITVKGSAGSSVSIFVAELFLVQKKNILY
LVDDKEDALYANTEMEDLLGKEKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINAGRS
PKVIIAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFIDELLNHYHFQQSDFVSEPGEF
SVRGGIVDVFSYSYEKPYRITFFGNEVESIKTFDIETQLSVEKVKDFQLVSNMNFSVTGS
RVSLLQLLPKESYVISRNGMVGMQKIKSFYEKSLEKYETLNKDIAHRTPQELFISDQEFL
FDFKKFKTVDFGNAAIEGLKEITEIKMEQLPQPSFHKNFELLIEDIEEKQNAGFDTWISF
STEKQKERLESIFEELEHELPFKSFKSELHEGFVDNGHKILVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKFNGPDGKEIVLSKLGSPTWKSLKQKTKAKVKQIAFDLIQLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATIDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNVSYVNRFRTAKQKSETLDDLKNG
KVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFNEEILRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGRQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFENLFDNEEDR
QKLFKSVKDVNIDTDLELMLPDSYISNTEERLLLYQKIAEIDNEKDLHQFELELIDRFGA
LPKEAINLLKSVALKWLASDIGFEKIVMKNGVFLGYFPSNPQDKFYQTDRFRHIIHYLTK
NPAEAQLKEKSGKEGNQLMMRKEKVKNVDEVNALLKSMI
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaaatccattaacgaaaagtttcttcctgatttgatgcaaaaagaattcggg
aaagaaatcttcaaccagttagaagataaccagcatattactgtgaaaggaagtgcagga
tcttcagtttctattttcgtggctgagctttttttggttcaaaagaaaaatattctttat
ctggtagatgataaggaagatgcattatatgccaatacggagatggaagatttgcttggg
aaagaaaaagttctttactttccggcaacacatcttgagccttatcaggttgaaaaaaca
caaaatgctaacctggttctgagaacagaggttttaaataaaatcaatgctggaagatct
ccaaaagtcatcatagcgtatgcgggtgctttatctgaaaaagtattaaagaaggaagat
tttaaagcgatttctcatcatattaaagtaggagatcagttagattttgattttatagat
gaattgctcaatcattatcactttcaacagtcggatttcgtgtcggaacccggtgagttt
tctgtaagaggaggaattgtagacgtattttcttattcatatgagaagccataccgaatt
actttctttggaaatgaggtggaaagtatcaaaacatttgatatagaaacacaactttcc
gtagagaaagtaaaagacttccaactggtctcaaacatgaatttttctgtaacgggaagt
agggtgtctttgcttcagttgctgccgaaagaaagctatgtcatctccagaaacggaatg
gtaggcatgcagaagatcaaatccttctatgaaaagtctcttgaaaaatatgagaccttg
aataaagacattgcccacagaactcctcaggaactttttatttcagatcaggaattctta
tttgattttaaaaagtttaagacagttgattttggaaatgctgcgatcgaaggattaaag
gaaattaccgaaattaaaatggagcagcttccacagccttctttccataaaaactttgag
cttctgattgaagatatcgaggaaaagcaaaatgcaggatttgatacatggatttctttt
tccaccgaaaaacaaaaagaaagacttgaatctatttttgaagaactggaacatgagctt
ccttttaaaagctttaagtcagagcttcatgaaggttttgtcgataatggtcataaaata
ttagtatatactgatcatcagatttttgaccgttaccaacgatataaggctaaaaatact
tttgcgaaatcggagcaactcactctgaaagatttaatgtctttaaagattggagattat
attgcccatattgatcacgggatcggaaagtttatgggcttggttaaagtaaataatgat
ggtaaaattcaggaatgctttaaactgacttataaaaatggagatctgttatatgtaagt
atccactcactgcataagatttcaaagtttaatggtcctgacggaaaggagattgtcctg
agtaaattaggatctcctacctggaagtctttaaaacaaaagacaaaggcaaaagtgaaa
cagattgcttttgatcttattcaattatatgctcaaagaaaaacagcaaaaggatttgct
tatacacctgattcttatttgcaaaatgagttggaagcgagctttatctacgaagatact
cccgatcaggaaaaggcaaccattgatgtgaagaaagatatggaggccgatacggtgatg
gatagattggtttgtggagatgtaggtttcggtaaaacagaggtggcaatcagagccgca
tttaaagcggcgacggatggaaaacaggttgcgatactggttcccactacaatcctggca
tttcaacattacagaagtttcaaagagagattgaaagattttccggttaatgtgtcttat
gtgaaccgattcaggactgctaagcaaaagtcagaaacactggatgatctgaaaaacggg
aaagttgatattattattggtacccatcaattggtgagcagttcggtgaagtttaaagat
ttaggattgttgattattgatgaagaacataaattcggagtttcggtaaaagataagctt
aagaccctgaaaaataatgtggatactttaacgcttactgcgacacctataccgaggact
ttgcagttttctttgatggctgcaagagatttgtccgtaattaaaacgccaccgccaaac
agacagccggtagatacacaacttatcggattcaatgaagaaattcttcgtgatgcggtt
tcgtatgaacttcagagagacggacaagtctattttattaacaacagaattgaaaatctg
aaagatattgcaggactcattcagagattggttccggatgcgagggttatcaccggccac
ggccaaatggaaggcaggcagcttgaaaagaatgtcctcgattttatggaaggaaaatat
gacgtccttgtttccacaacgattgtagaaagtggggtggatgtaccgaatgctaatacc
atttttattaacgatgcccaaagattcggtatggcagatcttcaccagatgagaggaagg
gttggacgaagtaacagaaaggcgttctgctatctgattactcctccttatgatatgatg
acttctgatgcgagaaagcgtctggaagcgattgaacagttttcagatttgggaagcggc
ttccagattgcaatgaaagatcttgaaatccgtggagccggtgatttgctgggagcggag
caaagtggttttattaatgaaatgggatttgaaacctatcagaaattgatgcaggaagca
cttgaagaactgaaagatgatgctgattttgaaaacttatttgacaatgaagaagaccgt
cagaagctatttaaatctgtgaaagatgtaaatatcgatacggatttagaattgatgtta
ccggattcatatatctccaatacggaggaaagattgctgttgtatcagaaaattgcagag
attgataatgaaaaagaccttcatcagtttgaacttgaattgattgaccgttttggagca
ttgccgaaagaagcgatcaaccttttaaaaagtgttgcattaaaatggcttgcttcagat
ataggttttgaaaagattgtgatgaaaaacggagtctttttaggctacttcccaagtaat
ccgcaggataagttttatcagacggacagattcaggcacatcattcattatttaacgaag
aatcctgccgaagctcagcttaaagagaaatcgggtaaagaaggtaatcaattgatgatg
agaaaggaaaaggtgaagaatgtagatgaggtcaatgcgttattaaagtcaatgatttga
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