KEGG   Clostridium sp. BNL1100: Clo1100_0394
Entry
Clo1100_0394      CDS       T01708                                 
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
clb  Clostridium sp. BNL1100
Pathway
clb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:clb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Clo1100_0394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clb03400]
    Clo1100_0394
Enzymes [BR:clb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Clo1100_0394
DNA repair and recombination proteins [BR:clb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Clo1100_0394
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: AEY64680
UniProt: H2JI29
LinkDB
Position
439603..440514
AA seq 303 aa
MAAVTDIIKVEIENRVIDIKNPDKLFWPEAGVTKLEFVKTMTKLAPFLIKYSKNRMLTSI
RYPHGINDKSFFQKEKPQGTPEWVETVEFNQKNYIALNSAATLVWLCTQAALELHTSFNV
HEKPNHPSSLVFDLDPDDDLHFEDVAELADRIHETLEALGIKGFIKTSGATGLQIFVPTA
SKFDYDTARSLNEFFAQYFAEKLISTVTIERMKKKRDGKIYFDWQQMWIGKSMITAYSAR
AVKSAAVSAPIEWSELNSIRPEMFTLKNIVNRLEQKGDIFEPSLKLDNSPQLNEILKQID
TAR
NT seq 912 nt   +upstreamnt  +downstreamnt
atggctgctgtaacagatattataaaagtagaaattgaaaacagagtaattgatataaaa
aatcctgacaaattattttggccggaagccggggttactaagcttgagtttgtgaaaacc
atgacaaagctggctccctttttaataaaatattcaaaaaatagaatgttgacatcaata
cgttaccctcacggtatcaacgacaaaagcttttttcagaaggaaaagcctcagggtacc
cccgagtgggtggaaacagtggaattcaatcaaaaaaactatattgccttaaactcggct
gccacacttgtatggctttgtactcaggcggcgctggagcttcacaccagttttaatgta
catgaaaaaccaaaccatccgtccagtcttgtatttgacttggacccggacgatgacctt
cattttgaagatgttgcagagcttgctgacagaattcatgaaacgttggaagctctgggc
ataaagggctttattaaaacctccggtgcaacggggctacagatatttgttcctaccgca
tcgaagtttgactatgacaccgcccgcagcctcaatgagttttttgcacagtattttgct
gaaaaactcataagtacagtgacaatagaaagaatgaagaaaaaaagggatggcaagatt
tattttgactggcagcaaatgtggattggaaaaagcatgataaccgcttattctgcaagg
gcagtgaaaagtgccgctgtttcggccccaatagaatggagtgagctgaatagtatacgc
ccggaaatgtttactcttaaaaatatagtgaacagattagagcaaaaaggagatatcttt
gaaccaagtctgaaattggacaattcaccgcagcttaacgaaatattgaaacagatagat
actgccaggtga

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