Clostridium sp. BNL1100: Clo1100_1117
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Entry
Clo1100_1117 CDS
T01708
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
clb
Clostridium sp. BNL1100
Pathway
clb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clo1100_1117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clb03400
]
Clo1100_1117
DNA repair and recombination proteins [BR:
clb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Clo1100_1117
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Clo1100_1117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
TrwB_AAD_bind
DUF87
AAA_22
FlaG
Microtub_bd
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
AEY65369
UniProt:
H2JEB1
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All DBs
Position
1318563..1320536
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AA seq
657 aa
AA seq
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MNKFEVISPYKPMGDQPEAIARISKGIQEGQKHQTLLGVTGSGKTYTMAKVIEQVQKPTL
VIAHNKTLAAQLCSEFKEFFPNNVVEYFVSYYDYYQPEAYIPSTDTYIEKDSSVNEEIDK
LRHSATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRVGMQKDRDEVIRKLVDIQY
ERNEIDFRRGRFRARGDVLEIFPANSSEKVLRVEFFGDEIERITEVDYLTGEIVGTREHI
AVFPASHYATTRPKMDRAMVTIEKELEERLEQFKMEGKLLEAQRLEQRTRYDLEMMSEIG
FCQGIENYSRHISGREAGSSPYTLMDYFPDDYLLVIDESHVTVSQVGAMYNGDRSRKESL
VEYGFRLPSAFDNRPLKFHEFEERVNQAVYVSATPAAYEREHSTQIVEQIIRPTGLIDPE
IIVRPVKGQIDDLIGEINMRAEKKQRVLVTTLTKKMAEDLTDYMKELDIKVKYLHSDVVT
FERMEIIRDLRLGVFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRA
ARNSEGKVIMYADNITGSMHRAISETNRRRQIQMDYNKKHGIVPTTIQKSVRDVLEATKV
AEEEDKYYTRKKETQMSEQELEKLIAKLQKEMKQAAADLQFERAAELRDKIESLRGK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaagttatttcgccgtacaagcctatgggagaccaaccggaagctata
gcaagaatcagtaaaggcatacaagaaggccaaaaacatcagacgcttttgggagtaaca
ggctcaggaaagacatataccatggctaaagttatagagcaggtacaaaagcctactctg
gtaattgcacacaacaagacacttgcagctcagctttgcagtgaattcaaagagtttttc
cccaataatgttgttgaatattttgtaagttattacgattactaccaaccggaagcatat
ataccatcaactgatacgtatatagaaaaagattcttccgtaaacgaagaaattgataaa
ttgagacactccgccacagccgcactgtttgagcgaagggacgtaattattgttgccagt
gtttcttgtatttatggtttgggtgaccccgaggattacaccgaccttatgctgtcactt
agggtaggtatgcagaaggacagggacgaagtaataagaaagctagtagacatacagtat
gaaagaaatgagatagatttcagaagaggaaggtttagggcaagaggagatgttctggag
atattccctgcaaacagctccgaaaaggtcttaagagtagaatttttcggtgatgagata
gagcgaatcaccgaagtagattatctcacgggtgagatagttggaacaagggagcacata
gctgttttcccggcttcccactatgctacaaccaggcctaaaatggaccgtgccatggta
actattgaaaaagagctggaggaaagactggagcagttcaagatggaaggcaagctgctg
gaagctcaaagactggagcaaagaaccagatatgatctggaaatgatgtctgaaatcggc
ttttgccagggaatagagaattattcccgtcatataagcggccgtgaagccggaagttca
ccatatacactgatggattattttcccgatgattatctgcttgttatagatgaatctcat
gttacggtatcgcaggtaggtgctatgtacaacggtgaccgttccagaaaggaatccctt
gtagagtatggtttccgactgccgtcagcctttgacaacagaccccttaaattccatgaa
tttgaggaacgagtgaatcaggcggtatatgtaagtgccaccccggctgcttatgaaaga
gagcattctactcagatagttgaacagattataagacccacaggcttgattgatcctgag
attatagtaaggccagtaaaaggacagatagatgacttaatcggtgaaattaatatgagg
gctgagaagaaacaaagagtccttgtaacaacccttactaaaaagatggctgaagatttg
actgactatatgaaggaactggacataaaggttaagtaccttcattcagatgttgtcaca
tttgagagaatggagataataagagatttacgtttgggggtttttgatgttctcattggt
ataaatttgttaagagaaggtcttgatattccggaggtctcgctggtagccatactggat
gcggataaggaaggttttctgcgttctgaaacatcacttatacagactataggaagagct
gccagaaattctgaaggtaaggttataatgtatgctgacaatattacaggctcaatgcac
agagctataagtgagaccaacagaagacgtcagattcagatggattacaataagaagcat
ggaattgttccaactactattcagaaatccgtaagagatgttctggaagccacaaaggtt
gccgaagaagaggacaagtattatacccgaaagaaagaaactcaaatgtcggaacaggaa
cttgaaaaacttatagcaaaactccagaaggaaatgaagcaggcagcagctgatttacaa
tttgagcgtgcagcagaattaagagataagatagaatcactcagggggaagtaa
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