Caldicellulosiruptor acetigenus 6A: Calla_1760
Help
Entry
Calla_1760 CDS
T01600
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
clc
Caldicellulosiruptor acetigenus 6A
Pathway
clc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Calla_1760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clc03400
]
Calla_1760
Enzymes [BR:
clc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Calla_1760
DNA repair and recombination proteins [BR:
clc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Calla_1760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
MotCF
betaPIX_CC
Motif
Other DBs
NCBI-ProteinID:
AEM74345
UniProt:
G2PTZ4
LinkDB
All DBs
Position
complement(1842025..1845450)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLKVLERLDGFKTLEEIVAKKSLPVVVTGVGEMGKALVVKSLCEKFNKKALFITTQRAKL
EWERRFKNLFSSVVSLQERENPYVAPFAKSRDSEITRIEQFVKIFEDGFDVLILTAQNLF
EKYTDLKFDCILLTEGLDIQLETLIGKLLTFGYERVKTVEKKGQFSQKGGIVDIYPVAST
YPVRIEFFGDTIDTIRLFDVETQKSFEKIDSIKIYKAIEWDLQEDFSEGLKHIKDDYKKM
KSKLKEESRKNLEEIFKEVIEGIRLDVERLYPYYYQQFLSVIDIFSECLIFVDEYSQVYN
SLKAFEQEMREMFSDLLEKGFVLPRMADCYYTVDKILQKFSSTIILQTFASSIKEIELRE
IISFNFFRELPTYNAQKEVLIDDLKYYMSKDYTINIFTGSRTSLEDLEEALLKKNIQFFE
LDEPEIEKPGVYLIAKSAEKGIEIHDIKWVCLSFFHLEKKKETEAKKRAKSKKDAFYTIE
DLKPGDFVVHRTHGIGKFLGFEKITVEGTTKEYVKLEYANSSYLYVPTTNLDVIEKYIGT
DDVQPKLSKLGSQEWQKQKQKVRKSLEIVAKDLVELYAKRQLHKGFKFSKDTLWQKEFEE
KFPYTETEGQLQAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVL
VPTTILAQQHYMTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLS
SDVKFKDLGLLIIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSV
IEDPPEDRYPVQTFVLEYNERIIKEAILREISRGGQVFYLYNRIKDIQEVAAKLQNLVGD
SIKVACAHGQMPEEELERVLLDFIEGRYDVLVCTTIIESGVDMPNVNTLIVKDSDRLGLA
QLYQLRGRVGRSNRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRG
AGSVLGKLQHGHINSVGYDMYIRLLSEEIRRLKGENIQPEIEPQIDVKVSAFISSSYIDD
EKERINMYKKISSIESKDDVNDIYDELIDRFGDVPKEVDNLIKVAYLKCLCKKAGIISIL
QLQESLFKLQFFNNEMLLKAMNKFLQQGLSCSQNKDDCLQLFIENNWLDTLIAILEDLQE
S
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaggttttagaaaggcttgatggctttaaaactcttgaagagattgttgccaaa
aaaagccttcctgttgttgtcacaggcgttggtgagatggggaaggcacttgtggtcaag
tctttatgtgaaaaatttaacaaaaaggcgttgtttataacaactcaaagagcaaaactt
gagtgggaaagaaggtttaaaaacctttttagtagtgtagtgagcctgcaggaaagagaa
aatccgtatgttgcaccttttgcaaagagcagggattctgaaattaccaggatagagcag
tttgtaaagatttttgaggatggttttgatgttctcatattaactgcccagaaccttttt
gaaaagtacacagatttgaagtttgattgcattcttctcacagaaggtcttgacattcag
cttgaaacccttataggaaagcttttaacattcgggtatgaaagagtaaaaactgtggaa
aagaaaggacagttttctcaaaaaggtggcatagttgatatatatcctgtggcaagcaca
tatcctgtgaggattgagttttttggagataccatagatacaattagactttttgatgtt
gaaacccaaaaatcttttgaaaaaatagatagtattaaaatttacaaggcaattgagtgg
gatttgcaagaagacttttcagagggcttaaaacatataaaagatgactataaaaaaatg
aaatctaagctgaaagaagagagcagaaagaatttagaagagattttcaaagaagtgata
gaaggaattcggctggatgttgaaaggctgtatccatattactatcagcaatttttatca
gttattgatatttttagtgaatgtcttatttttgttgacgagtatagtcaagtttacaac
agcttgaaagcttttgaacaagagatgcgagagatgttttcagaccttttagaaaaaggg
tttgtgcttccgaggatggcagactgttattatactgttgataagattttgcaaaagttc
tcaagcaccataattcttcaaacatttgcgtcttctattaaagagattgaactgagagag
attatatctttcaacttctttcgagaacttcccacctacaatgctcagaaagaggtttta
attgatgatttgaagtattatatgtcaaaagactataccataaacatctttacaggaagt
cgaacatcccttgaagatttagaagaggcacttttaaaaaaaaatatacagttttttgag
cttgatgagccagaaatagaaaaaccaggagtatatctaatagccaaatctgccgaaaag
ggcattgagatacatgatatcaaatgggtttgcctttcatttttccatcttgaaaagaaa
aaggaaacagaagcaaaaaagagggcaaaatctaaaaaggatgctttttacacaattgaa
gatttaaaaccaggtgattttgtcgttcacagaacacatggtattggcaaattcttggga
tttgaaaagattacagttgagggtacaacaaaagaatatgtaaaacttgaatatgctaac
tcttcttatctatatgttccaaccacaaacttggatgtgattgaaaagtatattggaaca
gacgatgtacagccaaaactatctaagcttgggtcacaagagtggcaaaagcaaaaacaa
aaggtaagaaaatctcttgagattgtagcaaaagacctggttgagctttatgcaaaaaga
cagcttcacaaaggttttaaattttcaaaagatacgctttggcagaaagagtttgaagag
aagtttccatacacagagacagaaggacagcttcaggcaatagaagagataaaaagggat
atggaaagtgaaaaaccgatggacaggatactttgcggcgatgttggttatggcaaaact
gaggttgcaatgagagcagcattcaaagctgtgatggattcaaaacaggtggcagtactt
gttcccacaacaattcttgcacagcagcattacatgacattttctgcacgaatgaaagat
tttccagtaacaattgaggttctctcacgtttaaaaaatgagacacaacaaaagaagata
ataaaaggtttaaaagaaggtacaattgacattgtgattggtacgcacaggctactttcg
agcgatgttaagttcaaagaccttggtcttttgattattgatgaagaacacaagtttggc
gtggaagcaaaagagaagataaaaaagctaaaaacaaatgttgatgttctgaccctcacc
gcaacacctataccaaggacacttaacatggcacttttaggaatcagggatttgagcgtg
attgaagacccgcctgaagataggtatcctgtacagacatttgtgcttgagtacaatgaa
aggataataaaagaagctattttaagagaaatttcaagaggaggtcaggtattttatctt
tacaataggataaaagatatacaagaggtggctgccaaacttcaaaaccttgtgggcgac
agtataaaagttgcatgtgctcacgggcaaatgcccgaagaagagttggagagagtgtta
cttgattttattgaaggcaggtacgatgtgcttgtgtgcacaacaatcatagagtctggg
gttgacatgccaaacgtcaatacacttattgtcaaagacagcgacagacttggtcttgcc
cagctttatcagctaagaggaagagtgggtcggtctaacaggctggcatatgcatatttt
acatttagaaaagacaaggtgctgtccgaacaggcacagaagagacttgctgcaataaag
gagtttacagaacttgggtcgggttttaaaattgccatgagggaccttgagataagaggt
gcggggtctgtgcttggaaagcttcagcacggtcatataaacagtgttgggtatgatatg
tatataagacttctttcagaagagataaggaggcttaaaggcgaaaatatacagccggag
attgaacctcagatagatgtaaaggtaagcgcgtttattagcagcagttacattgacgat
gaaaaagagagaattaatatgtacaaaaagatttcgtcaatcgagtcaaaagatgatgta
aacgatatttatgatgagctgatagacaggtttggggatgtgcccaaagaggttgacaat
ttaataaaggttgcgtacttgaaatgtttgtgtaaaaaggcagggataataagcatttta
cagcttcaagaatctctttttaaacttcagttttttaacaatgaaatgcttttaaaagca
atgaacaagtttttgcagcaaggactttcatgttcgcaaaacaaggacgactgcttacag
ctctttatagagaataactggcttgataccctgatagctattttagaagatttacaagaa
agttaa
DBGET
integrated database retrieval system
