Caldicellulosiruptor acetigenus 6A: Calla_1980
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Entry
Calla_1980 CDS
T01600
Name
(GenBank) tRNA pseudouridine synthase D TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
clc
Caldicellulosiruptor acetigenus 6A
Brite
KEGG Orthology (KO) [BR:
clc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clc03016
]
Calla_1980
Enzymes [BR:
clc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Calla_1980
Transfer RNA biogenesis [BR:
clc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Calla_1980
Prokaryotic type
Calla_1980
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Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AEM74553
UniProt:
G2PV01
LinkDB
All DBs
Position
complement(2074888..2076054)
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AA seq
388 aa
AA seq
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MKIKVLPEDFVVREKLKLEIKSSGRYKIYLLTKRHWNTVDALRFISKENKIPLEKIGCAG
RKDRHALTFQYISVPREYTINFNKENVKVELIGYSDDFVSPLILEGNFFEITIRKLKNKD
EKVLRRLNEVQQFGFPNYFDDQRFGSTQSEDEFIGEKIVKKHYNGALKLYFTTIHPEDKK
EEKQRKKKISELWGDFEKILPLCKTKVERDIIKTLLKGKSRHYLIEALNLIPKEEISIFL
SAYQSYIWNRTLSSILPYYADLLKPVKGKIMDYLIYTTLSTKSLNSLKNLQIPTVSSKIP
YVSNIVNNAILEILNERGVKPSDFDTKKIKSWYFKSFLRPAIVFPEKLEVSSFEEDDFYE
GYYKLRIKFYLPAGSFATMLIKSLTVLD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
ttgaagattaaggttttgccagaggattttgttgtgagggaaaaacttaagcttgagata
aaatcgtcgggcagatacaagatttatcttttaacaaaaaggcactggaacacggttgat
gctctcaggttcatctcaaaggaaaacaagattccacttgagaagattggctgtgcaggc
agaaaagacagacacgcactcacttttcagtatatttctgtgccaagagaatataccata
aactttaacaaagaaaatgtaaaggtagagcttatagggtattcagatgattttgtatcc
cctttgattctcgaagggaatttttttgaaataacaataagaaaattaaaaaataaggat
gaaaaagttttacgaagactgaatgaagtacagcagtttggctttcccaactactttgac
gaccagcggtttggaagcacccaaagtgaagatgagttcataggcgaaaagatagttaaa
aaacattacaacggtgccctcaaactttactttacaaccattcatcctgaagataaaaag
gaagaaaagcaaaggaagaaaaaaatatctgagctttggggagactttgaaaagatactg
cctctttgtaaaacgaaggtagaaagggatattataaaaactctcttaaaaggcaagagc
agacactatttaatcgaagcactcaatcttattcctaaggaagaaatatccatttttctt
tctgcttaccagagctatatatggaacaggactttgagttccattttaccttattatgct
gatttattaaaacctgtaaaaggaaaaattatggactacttgatttacactacactttca
acaaagtctttaaatagcttaaaaaaccttcagatcccaactgtttcatcaaaaataccc
tatgtaagtaatattgtcaataacgctattttagagattttaaatgaaagaggagtaaag
ccttctgactttgatacaaagaaaattaaaagttggtattttaaatcgtttttaagacct
gccatagtctttccagaaaagcttgaggtttcaagctttgaagaggatgatttttatgaa
gggtattataagctgaggataaaattctaccttcctgcgggctcctttgctacaatgctg
ataaagagtttaacagttttggattga
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