Clostridium sporogenes: CLSPO_c37220
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Entry
CLSPO_c37220 CDS
T03905
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cld
Clostridium sporogenes
Pathway
cld03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLSPO_c37220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cld03400
]
CLSPO_c37220 (mfd)
Enzymes [BR:
cld01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLSPO_c37220 (mfd)
DNA repair and recombination proteins [BR:
cld03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLSPO_c37220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AKC64392
UniProt:
A0A7U4LPG7
LinkDB
All DBs
Position
complement(4033447..4036953)
Genome browser
AA seq
1168 aa
AA seq
DB search
MRLEGLVSPLSSSEDFKSLLNNINLNKFPIGTYGLADSGKNYFISSIFANVDKSLVIFTH
SDVEARKIYEDLSLYTTEVYYLPTKEVVFYNIYAISGDLRWERLKVINEVLSTKKKIIVT
CIESLGATYIPKELYTKYTFKLSVGDIIETKSLEEKLVKSGYERVDIVENKGEFSVRGGI
IDIYPPISSEPYRLEFFGDEVDSIRNFNINSQRSIEKVNSISIFPAKEIILEEENINLGL
KNIKADLDKLVCNLSKKEDKEKIKSIINSNLEQLNESWSFENIDTFLPYFYTKTNSLLDY
IEDSFIVIDDVKRCLGKLDSTYLEFNEDYDKFLEKGYILPRQAEIVYDKERIIEQLEYKK
IITIENIKKTIDKLKPKSVLTFNQTTLQGYNGKIEFLIEDIKEKKKEKYKILILSGTRSR
GERLVNHLRDMGVESSYKDIVREIKPGEVVITFGNQTNGFQYYDIKLSVISDKDIFGQFK
KRGKKKQNKKGTGKIKSFTELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIYHSD
DKLYVPVEQLDMVQRYIGSEGKKPKVNKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRA
TLKGYKYSDDTVWQKQFEEEFPYEETPDQVLAIEDIKRDMESPKPMDRLLCGDVGYGKTE
VAIRAAFKAVMDGKQVAFLVPTTILAQQHYNNFKQRFSDFPVTVDVISRFRTLSEQRATI
KSIKEGNVDILIGTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSA
TPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVY
NRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILVATTIIETGMD
IKNVNTMIIYDADKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDF
TELGSGFKIALKDLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPVE
TSVELKIDAYIPNTYIKDETQKIEVYKKIASIDSKEEFMDIEEELEDRFSDIPISVYNLM
NISYIRSLGKKLDVEEIKEISNEVVFQFQDKSSLKEKIVKIIMDKYSKEVAFKLNEKPAI
GYSIKNIKKEQVLSVIKDFLEYIVDNNE
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaggctagaaggtttagtatcacctttgagttcaagtgaagattttaaaagtttatta
aacaatataaatttaaataaatttcctataggcacatatggattagcggattctggtaaa
aattattttattagtagtatatttgctaatgtagataaatctttagtaatctttactcat
agtgatgtggaagctagaaaaatatatgaagatttaagtttatatacaacagaggtatat
tatttacctactaaagaagttgtattttataatatttatgctatatcaggagatttaaga
tgggaaagacttaaagttataaatgaagttttaagtactaaaaagaagataatagttacg
tgtatagaatctttaggtgctacatatatacctaaagagttatatacaaagtatacattt
aaattgtctgttggagatattatagaaacaaagtcattagaagaaaaattagtaaaaagc
ggatatgaaagagtagatatagtagagaataaaggagagttctctgtaagaggaggaata
atagatatatatcctcctatttcatcagaaccctatagattagaattttttggtgacgag
gtagattctataagaaactttaatataaactctcaaagaagtattgaaaaagttaatagt
ataagtatattcccagctaaagaaattatacttgaagaagaaaatataaacttaggacta
aaaaatataaaagctgatttagataaattagtttgtaatttaagtaaaaaggaagacaaa
gagaagataaaaagtataataaatagtaatttagaacagttaaatgaaagctggtctttt
gaaaatatagatacttttcttccttatttttacacaaaaactaacagcttattagattat
atagaagattcttttattgttatagatgatgttaaacgatgtttaggtaagttagatagt
acttatttagagtttaatgaagattatgataaatttttagaaaaaggatatatattacct
agacaggctgaaattgtttatgataaagaaagaataatcgaacagttagaatacaaaaaa
ataattactatagaaaacataaaaaaaactatagataaattaaagcctaagtctgtttta
acatttaatcaaacaactctacaaggttataatggtaaaattgaatttttaatagaggat
ataaaagaaaagaaaaaagagaaatataaaatactaattttatcgggaactaggagtaga
ggagaaagattagtaaatcatcttagagacatgggagtagagagttcatataaggatata
gtaagagaaattaaacccggagaagtggttataacttttggaaatcaaacaaacggattt
cagtattatgatataaaattaagtgttatatctgacaaggatatattcggacaatttaaa
aagagggggaaaaagaaacagaataaaaaaggaacagggaaaattaaaagttttactgag
cttaaaccgggagattttgtagttcatgctaaccatggtattggggtatttaaaggtata
aagcaattagaattacaaggtaacaaaaaggattatttagagttaatatatcattcagat
gataagctttatgtaccagtagagcagttggatatggtgcaaagatatataggcagtgag
ggtaagaaacctaaagtaaataaactaggaagttcagaatggactaaaactaaaaataag
gttaaaaagtccatagaagaaattgcagaggatttagtaaaattatatgctataagagct
actctaaagggttataaatattctgatgatacagtatggcaaaagcaatttgaagaagaa
tttccttatgaagaaacaccggatcaagtattagctatagaggatataaaaagggatatg
gaatcaccaaaacctatggatagacttttatgcggagatgtaggttatgggaaaactgaa
gttgctataagagctgcctttaaggcagttatggatgggaaacaggtagcatttttagtt
cctactaccatattagctcaacaacattataataattttaaacaaagattttcggatttt
cctgtaacagttgatgttataagtagatttagaactttatcagagcaaagggctactata
aagtctattaaagaaggaaatgtagatatattaataggaactcatagaattcttcaaaag
gatataaaatttaaggatttaggattattaataatagacgaggaacaaagattcggagta
aagcataaagaaaaaatgaaaaatttaaagaaaaatgtagatgtcttaaccctaagtgct
acccctatacctaggactttacatatgtcattagtaggggttagagatataagtgttata
gaaactcctccagaggaaaggtaccctgttcaaacttatgtagtagagtataatgatcaa
ttgataagggattccatattaagggaaattagtagaggtggacaaatttattttgtatac
aatagagttgagagtatccatgagatggcgtcatatatatcaaagctagtgccagaagga
agagttcagatagcccatggccaaatgaaagaaaaagagctagagaacgtagtattagac
tttacagaaaataaatttgatatattagtggctacaacaataatagaaacaggcatggat
ataaaaaatgttaacactatgattatatatgatgcagataaaatgggactatctcagcta
tatcaattaagaggaagagtagggagaacaaatagaatggcatattgctacttaacttat
aaaagagataagatacttacagaagtagcagaaaaacgattaaaagccataaaggatttt
acagaattagggtcaggatttaagatagctttaaaggatttagaaataagaggagcaggt
aatatgatgggctctgctcaacatggacatatggcttctataggttatgatctttattgc
agaatgcttgaggatactataaagttagttaggggtgatatagataaagagccagtagaa
acttcagtagagttaaaaatagatgcttatatcccaaatacttatataaaagatgaaaca
caaaagatagaagtgtataaaaagattgcatctatagattctaaagaagagtttatggat
atagaagaggaattagaggatagattttcagatattccaatatccgtttataatttaatg
aatatatcttatataagaagcttaggtaaaaaacttgatgtagaagaaataaaagaaatt
tcaaatgaagttgtttttcaatttcaagacaagagtagcttaaaagaaaaaattgtgaag
attataatggataagtattcaaaggaagtagcatttaaattaaatgaaaagcctgctata
ggttatagtataaagaatataaagaaagaacaggttctttcagttataaaagatttttta
gaatatatagtggataacaatgaataa
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