Cellulosilyticum lentocellum: Clole_1104
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Entry
Clole_1104 CDS
T01448
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cle
Cellulosilyticum lentocellum
Pathway
cle03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clole_1104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cle03400
]
Clole_1104
Enzymes [BR:
cle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clole_1104
DNA repair and recombination proteins [BR:
cle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Clole_1104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADZ82834
UniProt:
F2JS20
LinkDB
All DBs
Position
1271953..1275492
Genome browser
AA seq
1179 aa
AA seq
DB search
MIKLGYKHKGLIEPLKEVQGMSQLLEHLEYGENVKVVNMIDACKGHFSYGIGCFTEKPLV
IITYDEPSTKQISEDMMALNGKEKVYIYPARDILFYNADVHSMDITSQRIKVIEALQKGE
KAVFIIPIEALLNPLSPKETWESYTKIVQAGECINISRLERELVQMGYERVGRVEGMGQF
AIRGGIIDIYTPIDEEPYRIELWDDEVDSIRNFNVQTQRSIQKVEALRIVPNQEIIFHLD
LLKEAIPAIKEDLKKTTKALRQAGKKESALKIEEQVGEAIDQIQNDISPRGLEMYIPYTS
LKLVSILDYLPKETLLIIDEPIKTKARCERVLEEYGMSMKDRLEYGHILPKQIQLIFEYE
HLIARMETFTKLFLMNFNAEVATFDVAYTLFLKVHENNTFYKNLELLEKDLKEWKKDNKR
VIILSGVKAKSLRLMSELEERGVIASYSENSEEEVKKGQILIYKGVLEKGFYYEDLGLYI
VADKDLFGKDKKTKKSKKKHSGAKIQSFLELAPGDYVVHEQHGIGVFKGVEQLVIEGISR
DNLKIEYADNNVLYVNINQMDMVQKYVGSEGKAPKLSKLGGSEWKKSKAKVKGAIQNIAK
ELVKLYSQRQYSRGFCYEEDTIWQKEFEAMFPYEETGDQLEAIEDVKKDMESDKIMDRLI
CGDVGYGKTEVAIRAAFKAVQNSKQVAYLVPTTILAQQHYQRFAERMADYPITIELLSRF
RTPKQIKKSLEGLASGKVDIIVGTHRLLSKDVQFKDLGLVIIDEEQRFGVTHKEKLKQLR
TQVDVMNLTATPIPRTLHMSLIGIRDMSVLEEAPVERKPVQTYVIEYSEDFIKDAINREL
TRGGQVYFLHNQVKDIEEKAHAIQELIPKARVAFAHGQMSERELEQIMLRFIEGEIDVLV
CTTIIETGLDISNANTIIMNHADRMGLSQLYQLRGRVGRSSRMGYAYLMYQKDKVLKEVA
EKRLQAIKQFTELGAGFKIAMRDLEIRGAGNLLGAQQHGHMESIGYDLYCKMLAEVVSEE
RGEEVAEEYETTIEIKLNAYIPGSYIPDEIQKLDIYKKIASIKNETDYLDVQEEIEDRYG
NIPVAVYNLLDIALIKAMAHDLYIILVSENNKHVTFKFKENAPLNAEKVPEILKEYGRNL
KFVGGKEPAFKANLEEAGKKELLSNIKNILHLLKKLKSE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgattaaattgggatataaacataaaggacttatagaacctttaaaagaagtgcaggga
atgtcacagcttttagagcatctggagtacggtgaaaatgtcaaggtggtaaacatgata
gatgcctgcaaaggtcatttttcatatggcataggttgcttcactgaaaagccacttgta
attatcacttatgatgagccaagtaccaagcaaatttcagaagatatgatggctttaaac
ggtaaagaaaaagtgtatatttatcctgcaagagatatcttgttttataacgcagatgtg
cacagtatggatattacttcccagcgtattaaagtgattgaggccttacaaaaaggagaa
aaggcagtgtttatcattcctattgaggcactacttaatcctttgtcccctaaagaaaca
tgggaatcttatacaaagattgtacaagcgggagaatgcattaacattagccgtttagaa
cgtgaattagttcaaatgggctatgaacgagttgggcgagtagaaggaatgggacaattt
gccattcgtggcggtattatagacatttatacacctattgatgaagaaccttatagaatt
gaactttgggatgatgaagtcgactctataaggaactttaacgtgcaaacacaacgctct
attcaaaaggtagaggcactacgtattgtgcctaatcaggaaattatttttcatttagac
cttttaaaagaagctattccagcgattaaagaagacctgaaaaagactactaaagcgtta
agacaagccggcaaaaaggaaagtgcacttaagatagaggaacaagtgggagaagcaata
gatcaaattcaaaatgatattagtcctcgaggattagagatgtatataccatatacgtcg
ctaaaattagtatctattttagattacttacctaaagagacacttctcattattgatgaa
ccaattaaaacaaaggcaagatgtgaacgggtattagaagaatacggtatgagtatgaaa
gatcgccttgaatacggtcatattttacccaaacaaattcagcttatttttgagtatgag
catttaattgcgcgtatggaaaccttcactaaactttttctcatgaactttaatgcagaa
gtggcgacttttgatgttgcttatacgctattccttaaagtgcatgagaataatactttt
tataaaaatcttgaactcctagagaaggatttaaaggaatggaagaaagataataaaaga
gttattattttatcaggtgttaaagcaaaatccttacgtcttatgagtgagctagaagaa
agaggagtcattgcgagttatagtgaaaatagtgaagaggaagttaagaaggggcaaatt
ctaatttacaagggtgttttagagaaaggtttttattatgaggatttaggcctttatata
gtggctgataaagatttatttggaaaagataagaaaaccaaaaaatccaagaaaaaacac
agtggtgctaaaatacaaagctttttggaacttgcacctggagattatgttgtacatgaa
caacatggtatcggtgtatttaaaggggtcgagcaacttgtcattgaaggtattagtaga
gacaatttaaaaatagaatatgcagacaacaatgtattgtacgttaatatcaatcaaatg
gatatggttcaaaaatatgtaggttcagaaggtaaggcgcctaaacttagtaaactaggt
ggatctgaatggaaaaaatctaaagcaaaagtcaaaggagctattcaaaacatagctaaa
gagcttgttaagctttatagccaaagacaatattcaagaggattttgctatgaagaagat
acaatttggcaaaaagaatttgaagctatgtttccttatgaagaaactggtgatcaacta
gaagctattgaagatgttaaaaaagatatggaaagtgataaaatcatggaccgtcttatt
tgtggagatgtaggatatgggaaaacagaagtggctatccgtgctgcttttaaagcagta
caaaatagcaagcaagtggcatatcttgtaccaactactattttagctcagcaacattat
cagcgttttgcagaacgtatggcagactatcctattaccatagaattgctttcacgtttt
agaacgcctaagcaaattaagaaaagcttagaaggcctagcaagtggaaaagtagatatt
atcgtcgggacccatagattgttatccaaggatgtacagtttaaagacttggggcttgta
atcattgatgaagagcaacgcttcggtgtaactcacaaagaaaaacttaaacagcttcgt
acacaagttgatgtaatgaatttaacagcaacacctattccgagaacccttcacatgagt
ttaatagggattagggatatgagtgttttagaagaagctccggttgaaagaaaacctgta
caaacctatgtgattgagtatagtgaagactttattaaggatgccattaatagagagtta
actagaggaggacaggtctatttccttcataatcaagtcaaagatatagaagaaaaggca
catgctattcaagagctgattcctaaagcaagagtggcatttgcccatggacaaatgagc
gaacgagaactggagcaaatcatgttgcgctttatagaaggtgaaattgacgttttagta
tgtactactattattgaaacgggtttggatatttctaatgcgaatacaattattatgaat
catgcagatcgtatggggctgagtcaattgtatcaacttcgtggacgtgttgggcgctca
agtcgtatggggtatgcttatttgatgtatcaaaaagataaggtactaaaagaagtagct
gagaagcgtcttcaagccattaagcagtttactgaacttggagctggttttaaaattgca
atgagagacttagaaattagaggggcaggcaatttattaggtgctcagcaacatgggcat
atggagtccattggatacgatttgtactgcaaaatgttagcggaagtagtgagtgaagaa
agaggggaagaagtagcggaagaatatgaaacaactatagaaattaaattgaatgcttat
attccaggtagttatattcctgatgaaatacaaaagctggatatttataaaaagattgct
tcgattaaaaatgaaacagactatttagatgttcaagaagaaattgaagaccgttatgga
aacatcccagtggctgtatataatttattagacattgcccttatcaaagctatggcacat
gatttatatattattttagtatctgagaacaataaacatgtaacctttaagtttaaagaa
aatgcacctcttaatgctgaaaaagtacctgaaatacttaaagagtatggtagaaatcta
aaattcgtaggaggcaaggaacctgcttttaaagcgaatctagaagaagcagggaaaaaa
gagctacttagtaatattaaaaatatattacatctgctcaaaaaattgaagagtgaatga
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