Cellulophaga lytica HI1: IX49_08560
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Entry
IX49_08560 CDS
T03279
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
clh
Cellulophaga lytica HI1
Pathway
clh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IX49_08560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clh03400
]
IX49_08560
Enzymes [BR:
clh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IX49_08560
DNA repair and recombination proteins [BR:
clh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IX49_08560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AIM60571
LinkDB
All DBs
Position
complement(1898605..1901946)
Genome browser
AA seq
1113 aa
AA seq
DB search
MGKSLILKSLAQLPQMQKLQTTIAKNEKNTTLTGLTGSALSFVISETFKEADTPFLVVFS
DKEEAAYHLNDLEQLVGEKDVLFYPGSYRRPYQIDEVDNANVLLRAEVLNRINSRKKPAL
LVTYPDALFEKVVTRKELDKNTLKIKVDDTITLDFLNEVLFEYKFKRVDFVTEPGEFSVR
GGIVDVFSFSNDVPYRIEFFGDEVDSIRTFDVETQLSTDKVTKITIVPNVENKFLDETRE
SFLKYIASKTVIFSKNTELLHDRLDSLFAKAEEAFTKLTGELKHAQPKELFVDSNQLKKE
FDGFNVISIHQTATNADKSIVFHSKPQPSFNKKFDLLIENLDQNHANKYTNYIFCATEQQ
AKRFHDIFDEVEQDVHYKTVVLPLFQGFILDDIKVACYTDHQVFERYHKFNLKNGYAKKQ
AITLKELTKLDIGDYVTHIDHGVGKFGGLQKIDVEGKKQEAIKLMYSERDVLYVSIHSLH
KISKFAGKDGKPPKIFKLGSGAWKKLKQKTKTRVKQIAFDLIKVYANRRLKKGFKYAPDS
YLQHELEASFIYEDTPDQSKATEDLKKDMESDRPMDRLICGDVGFGKTEVAIRAAFKAVD
NGKQVAVLVPTTILAFQHHKTFAERLKDMPVTVDYVNRFRTAKEKRETLERLAEGKVDII
IGTHQLVNKNVVFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSL
MAARDLSTINTAPPNRYPIDSHVVRFTEDTIRDAVSYEIQRGGQVFFIHNRIENIKEVAG
MLQRLVPDAKIGIGHGQMDGKKLETLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINN
ANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYDSMSNDARKRIQALEQFTELGSGFNIAM
KDLEIRGAGDILGGEQSGFINEIGFDAYQKILAETVEELKENEFKDLYEEVEGKDKVFVK
ETQIDSDFELLFPDDYVNNVTERLNLYTQLNQITTEEGLAKFEKELVDRFGEIPSPVEDL
LNSVRIKWIANSLGLEKIVLKKGKMIGYFIADQQSGFYQSPKFTKVLQFVQANTTICKMK
EKQTRAGLRLLLVFDKITTVEKALKSLAPFNTH
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
ttgggaaaatctctcattttaaaatcgttggcacagcttccgcaaatgcagaaactgcaa
actactattgccaaaaatgaaaaaaacacaacacttacaggtttaacaggctctgcccta
tcctttgtaatatctgaaacttttaaagaagcagacaccccttttctggttgtttttagc
gacaaagaagaggctgcttaccatttaaatgatttagagcaattggtaggcgaaaaagat
gtactgttttatcctggtagctaccgtagaccttaccaaatagacgaggtagataatgct
aatgtgctgctacgtgcagaggttttaaaccgaattaattcgcgtaaaaaaccagcatta
ctagttacgtatccagatgcgttgtttgagaaagtggtaacccgcaaagaactagataaa
aacacactaaaaattaaggttgatgacaccattaccctagactttttaaatgaggtgttg
tttgagtataagtttaaacgtgtagactttgttaccgaacctggagaattttcggttcgt
ggtggtattgtagatgttttttcgttttctaatgatgtaccttacagaatagaatttttt
ggtgatgaggtagatagcattagaacttttgatgtagaaacacaattatctacagacaaa
gtcactaaaattaccattgtacccaatgtagaaaataaatttttagacgaaaccagggag
agctttttaaaatatattgcctctaaaactgtcattttttctaaaaacacggagctttta
catgatagattagactcgctttttgcaaaagcagaagaagcttttacaaaacttacaggc
gagctaaaacacgctcagccaaaggagttgtttgtagattctaatcagttaaaaaaagag
tttgatgggtttaatgttataagcattcatcaaacagcaacaaatgcagataaatctatt
gtttttcattctaaaccacagccttcttttaataaaaagttcgacttactaattgagaac
ttagatcaaaatcacgctaataagtataccaattatattttttgcgctacagagcaacag
gcaaaacgttttcatgacatttttgatgaagtagaacaagatgtacattacaaaacagtt
gtattacctctttttcaaggttttattttagacgatataaaagttgcatgctacacagat
catcaagtttttgagcgttaccataaattcaaccttaaaaatggctatgcaaaaaagcaa
gccattacacttaaagaacttaccaagttagatattggagattatgtaacacacatagat
catggcgttggtaaatttggcggtttacaaaaaatagatgtagaaggtaaaaaacaagag
gccataaaattaatgtatagtgagcgcgatgtattgtacgttagcatacactccctacac
aaaatatctaaatttgcgggcaaagacggtaagcctccaaaaatatttaaactaggttct
ggtgcttggaaaaaactgaagcagaaaaccaaaaccagagttaaacaaattgcgtttgac
cttattaaagtatacgccaaccgtaggcttaaaaaaggatttaaatacgctccagatagt
tatttacagcacgagttagaggcttcttttatttatgaagataccccagaccaaagtaaa
gccaccgaagatcttaaaaaagatatggagagtgacaggccaatggatcgtcttatttgt
ggcgatgttggttttggtaaaacagaggttgctatacgtgccgcctttaaagcggtagat
aacggcaaacaagtagctgttttagtgccaacaactatattggcttttcagcaccataaa
acatttgcagagcgtttaaaagatatgcctgtaacggtagattatgtaaaccgttttaga
actgcaaaagaaaaaagagaaaccttagaacgtttggcagaaggcaaagtagatattata
attggcacacaccaattggtaaataaaaacgtagtttttaaagatctagggttgctaatt
gtagatgaggaacaaaaatttggtgttgctgtaaaagacaagttaaagtctattaaagaa
aatgtagatgtacttacattaactgctacgccaataccaagaacgctgcaatttagttta
atggcagccagagatttatctacaataaacacagcgccaccaaataggtacccaatagac
agccacgttgtacgctttacagaagacaccattagagatgcagtttcttacgagatacaa
agaggcggacaagtgttttttatacacaaccgtatagaaaatattaaagaggttgctggt
atgttgcaacgtttggttcctgatgctaaaattggcattggccacggacaaatggatggt
aaaaagctagaaactttaatgcttgcttttatgaatggtgagtttgatgttttagtgtct
accaccattatagaaagtggtttagatgttcctaacgccaatactatttttataaacaac
gccaataattttggtttaagtgatttgcaccaaatgcgtggccgtgtagggcgtagcaat
aaaaaagcattctgttattttattacaccaccttatgactctatgagtaacgatgctcgc
aagcgtatacaagcattagaacaatttacagagttgggtagtggttttaatattgcaatg
aaagatttagaaatacgtggtgcaggtgatattttaggtggtgagcaaagcggatttatt
aatgaaattggttttgatgcctatcaaaaaatattagcagaaactgtagaagaattaaaa
gaaaacgagtttaaagatttatacgaagaggtagaaggtaaagacaaagtatttgtaaaa
gaaactcagatagactctgattttgaacttttatttcctgatgattatgtaaataatgtt
acagaacgattaaacttatacacccaattaaaccaaattaccacagaagaaggtttagct
aagtttgaaaaagaattggtagaccgttttggggaaatacctagtccggttgaagattta
ctaaactcggttcgtataaaatggattgcaaatagcctaggtttagaaaaaattgtactt
aaaaaaggtaaaatgattggctattttattgcagaccaacaatctggtttttaccaaagt
cctaaattcactaaagttttacaatttgtacaagccaataccactatttgtaaaatgaaa
gaaaaacaaactagagctggcttacgtttacttttagtttttgataaaattactactgta
gaaaaagcattaaagagcttggctccttttaatacgcattaa
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