Chlorobium limicola: Clim_0770
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Entry
Clim_0770 CDS
T00766
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cli
Chlorobium limicola
Pathway
cli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clim_0770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cli03400
]
Clim_0770
Enzymes [BR:
cli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clim_0770
DNA repair and recombination proteins [BR:
cli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Clim_0770
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
RecG_dom3_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ACD89850
UniProt:
B3EHS0
LinkDB
All DBs
Position
complement(839888..843238)
Genome browser
AA seq
1116 aa
AA seq
DB search
MHENRFCPTHMKTLSETKISSIPVVKRTPSFLFDTLRQTDAFRLLKKRLEQNASGSAAQL
DPIGITGISGSLASLTAALLFFETDSPILVISGPENDELFENDFNLLVPSGSFFSVYDQL
PLAMMALADGTSVLLHASFSDLQQPLCSPDEIGKKLFRLDREKDAGYEKLKNFLRENQFE
HREFVEDEGEFSVRGSIIDVFSFGSPEPVRIEFFGDTVTSLRIFDINSQLSGKTVEHITV
TGNFSHETGSGKESYMLDYLPESAIILIESTSELGMLDDTDSAKKALFAFRQIHVSPVSS
DAIDFGSHPQKKIMANFRLLAGELQKAAAAGRQPVFASASKREIDELAEFLGDELREATE
THSPDIQWIAINLHSGFSFRHLDIYSESDIFGKFHTHRSHRKRKIKGISLKDLHRLKIGD
YVVHEDYGIGIFKSLETITVGNSEQECVLVEYEGGDQLFVNVQNINLLSKYTAAEGALPS
LSKLGSSKWAAKKEKVRKKIRDIAINLIRLYAERTMKPGFAFCADTIFMREFEASFIFEE
TPDQLKAIEEVKADMQKPHPMDRLICGDAGFGKTEIAMRAAFKAVESRKQVAILTPTTIL
AHQHLESFERRFANFPVSITVLSRFIPKKEQLERIEKIENGAIDIVIGTHRLVSKDVRFR
DLGLLIIDEEQHFGVEVKEKLRVSHPEVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPK
NRQPVETSISDYDPVLIQLAIQREIQRDGQVFFLHNRISGLEEIQHILRELVPYARIVYA
HGQMPSKELEKVMMDFMQKEVDVLISTSIIGSGLDISNANTIIINRADMFGLADLYQLRG
RVGRSERKAFCYMIAPPIHTLKREAVQRLAVIESFTELGAGFTVALRDLDIRGAGNLLGA
EQSGFIHELGFDLYQKMLEETVAELKSTHFRELFSESGNTPLKTVKNCDLVFFFDALIPD
YFISAVHERFSFYEKISKARRESELDAIGSELTDRFGELPEEVVNMLLLSRLKIRASSIG
IDKIDIQQETFTIFLPENDQENFEHRAFFQSLFSSVQQEWMIPFKPGFRMEKKLKLVLHH
PAGNSSRPAALLGIYTDLLKQLEEASKALPETPALP
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgcatgaaaataggttttgtccgactcatatgaaaacgttatcagaaacgaagatcagc
agtattccggttgtaaaaagaactccatcctttctcttcgacaccctaagacagactgat
gcctttcggctccttaaaaaaagactggagcaaaacgcttccggcagtgccgcacagctt
gatccgatagggataaccggtatcagcggctccctcgcgtctctgacagcggccctgctg
ttttttgaaacagactcgccgattctggttatcagcggaccggaaaatgacgaacttttt
gagaacgatttcaatctgctggttccttccggttcatttttcagcgtttacgatcagctg
cctcttgccatgatggctcttgcggacggcacctccgttctcctgcatgcatcattcagc
gatctgcagcagccgctctgttcaccggatgaaatcggaaaaaaactcttccggcttgat
agggaaaaagatgccggatatgaaaagctgaaaaattttctcagagaaaaccagtttgaa
catcgggagttcgtggaggatgagggcgaattttccgttcgcggatcgattatcgatgtt
ttttccttcggatcacccgaaccggtgcggatagagttttttggcgataccgtcacatcc
ctgcgaatattcgatatcaactcacagctttccggaaaaacagtcgagcacataaccgta
acgggaaacttcagtcatgaaaccggttccggcaaagaaagttacatgctcgactatctt
ccggaatccgcaatcatcctgatcgaaagcacatcggaactgggcatgctggatgatacc
gattctgcaaagaaagccctttttgcattccgtcaaatacatgtctctccggtttcctcc
gacgcaattgatttcggatcgcacccccagaaaaaaatcatggcgaatttccgtctgctg
gccggtgaactgcagaaagctgccgcagccggcaggcaacctgttttcgcctctgcttca
aaacgggaaatcgacgaactcgcagaatttcttggagatgaactgcgcgaagcaacagaa
actcactctcccgacattcaatggatcgccatcaatctgcattccggattttcgttcaga
catctcgacatctactccgagtccgatattttcggaaagttccatacccacagatcgcac
agaaaacggaaaatcaagggaatctccctgaaagatctgcaccgtctcaaaatcggagat
tacgttgttcatgaagattatggcatcgggatcttcaaatcccttgaaaccattaccgtc
ggcaattcggagcaggagtgcgtgctggtggaatatgaagggggcgatcagctctttgtc
aatgtccagaacatcaatctgctctcgaagtacaccgctgctgaaggcgctctcccctcc
ctgtcgaaactcggcagcagcaaatgggctgcaaaaaaagagaaggtcagaaaaaaaata
agggacatcgccatcaatctcatcaggctttatgccgagagaaccatgaagcccggcttt
gccttctgcgccgacacgattttcatgcgtgagtttgaagcatcatttatttttgaggag
actcctgatcagctcaaggcgattgaagaggttaaagccgatatgcagaagccccacccc
atggatcgcctgatatgcggcgacgccggattcggtaaaaccgaaatcgccatgcgggcg
gcattcaaggctgttgaatcccgaaaacaggtggccatactcacccctaccaccattctg
gctcatcagcatctggagtcgttcgaaagacgatttgcaaattttccggtttccattacc
gtgctcagccgtttcataccaaaaaaagaacagctcgaaagaatcgaaaaaattgaaaac
ggagcaatcgatattgtcatcggcacccatcggctggtctccaaagatgtccgtttcagg
gatctcggcctgctcataatcgatgaagaacaacacttcggggttgaagtgaaggaaaaa
ctgcgggtgtctcaccctgaggtggatactctcaccatgtctgcgactccgataccgaga
acgctgcagttctcgatgctgggcgcaagggatctctcaattgtctcaacgcctccaaaa
aaccgccagcctgtcgaaacctccatttcagattacgacccggtcctcattcagttggca
atccagcgtgaaatacaacgcgacggacaggtttttttcctgcacaaccgcatcagcggt
ctcgaagagattcagcatatactcagggaacttgtcccctatgcaagaatcgtctatgcg
catggccaaatgccttcaaaagagcttgaaaaagtcatgatggatttcatgcagaaagag
gtggatgtgctcatttccacatcgataatcggttcaggtctcgatatttccaatgccaac
accatcatcatcaacagagccgacatgttcggacttgccgacctctaccagctcagggga
agagtgggccgaagcgaacggaaagctttctgctacatgatcgccccacccattcataca
ttgaaaagggaagccgttcaacggcttgccgttattgaaagttttacggaactcggagcc
ggatttaccgtagcccttcgcgatctcgatatacggggagccggaaacctcctgggagcc
gaacagtccggcttcattcatgaactgggtttcgacctttaccagaaaatgcttgaggag
accgttgccgagctgaaatcaacgcacttccgcgaacttttctccgaaagcggcaacaca
ccactgaaaacagttaaaaactgtgacctggtctttttcttcgacgcactcattcccgat
tactttatcagcgccgtccatgagcggttcagtttctatgaaaaaatatcgaaagcccgc
cgtgaaagcgaactggacgccattggctccgaacttacagaccggtttggagaacttccc
gaagaagtagtcaacatgctcctgctctcaagacttaaaatccgtgcttcatcgatcggt
atcgataaaatcgatatccagcaagaaacattcaccatcttcctgcccgaaaacgatcag
gaaaactttgaacacagggcattttttcagtcccttttcagttccgttcagcaggaatgg
atgattccgttcaaaccgggtttcagaatggagaaaaaactgaaactggtgctgcaccat
cctgccgggaacagctccaggcccgcagctctgcttggcatctataccgatcttctcaaa
cagctcgaagaggcgtcaaaagcgttgcccgaaactccggcgctcccctga
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