Corynebacterium liangguodongii: C3E79_03835
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Entry
C3E79_03835 CDS
T07317
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
clia
Corynebacterium liangguodongii
Pathway
clia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C3E79_03835 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clia03400
]
C3E79_03835 (mfd)
Enzymes [BR:
clia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C3E79_03835 (mfd)
DNA repair and recombination proteins [BR:
clia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C3E79_03835 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
AAA_16
DUF3638
Glyco_trans_1_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWB83724
UniProt:
A0A2S0WDA2
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All DBs
Position
796390..799965
Genome browser
AA seq
1191 aa
AA seq
DB search
MSNTAPALGGVLARALTDPKLQGLMNNVGQSRLHITGIDQVRSWATAALSREAPVLLVTA
TGHEAEDLSAELAALIGPANVAYFPALETLPHERLSPAADVVGARAKVLHELPRVIVTAA
RGACQPVLPAVEPITISTAQEYDFTELVRRINGFAYDHVDMVAKRGEFATRGGLIDVFPT
TGEHPVRIEFWGDEVTDIRTFSVADQRTIDPVSRTELYPARQLLIDDSVAAKARQLAEDH
PGNPTLVQLLTRISEHHHADGMEALIPVLTDAPYKALPELLPEGSIVVVTSPEKVRARIA
DLEATDREFLEAGWEAAAMGAQGPVAVEGLDVSASSYRSFESLEASARKAGNSWWTFAAP
GMFSADDAETLPLEFSSAPAPKGDPRAIEQLFATLKLHVQSNGGTAAFIAPAKGTVERFA
ERLREHGISARIATPGLEPVDGKVTVYQGLSHAGVVFPGPNMVVVTETDLTGNRVGDIAG
AKRRARKRRNRVDPLALKPGDFVVHDTHGIGKFVKMAERTIKAGDGDSRREYIVLEYQPA
KRGQPNDQLWVPMESLDLLSKYSGGEQPSLSKMGGSDWKATKRKARAAVREIAGELVELY
AKRQAAPGHAFAPDTPWQQEMEERFPFVETEDQMTAIEAVKEDMEKPTPMDRVIVGDVGF
GKTEVAVRAAFKAVQDGTQVAVLVPTTLLAQQHFSTFSERMAGFGVNIRELSRFTSAADS
KEIIAGLADGSVDVVIGTHRLLATGVQWKNLGLIIVDEEQRFGVEHKEHIKALKSHVDVL
TMTATPIPRTLEMSLTGIREMTSITTPPEDRHPVLTYVGPQEDKQIAAAIRRELLRDGQV
FYIHNKVADIEKAARRVRDLVPEARVVVAHGQMSEQVLEQTVQGFWNREYDVLVCTTIVE
TGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRDRAYAYFLYPKDKTLTETSYDRLAT
IAQNNELGSGIAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVGEAVETFKAMMSG
EPVDATDSTPKEIRVDLPVDAHIPETYVNSERLRLEIYRKLAQARDDASLDAVAEEMADR
FGPLPDEVTRLMQVARLRHQARSVGISDILVQGTRIKFQPVDLPDSKQVRLKRLYPGANY
RAAAKVLQVPLPRVAQGINQPTLRDTELVQWVSDFLAEMFGAEAKVFSLSE
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgtccaataccgcacctgccctaggtggcgtgctcgcgcgcgccttgacggatcccaag
cttcaggggctgatgaacaacgtcggccagtctcgcctccacatcaccgggattgaccag
gtgcgcagctgggccaccgcggcgctctcgcgggaggccccggtgttgctcgtcaccgcg
acggggcacgaggcggaagatctcagcgcggagctcgccgcgctcattgggcctgcaaac
gtggcttacttcccggcgcttgagacgctgccgcacgagcggctttccccggcggcggat
gtggtgggcgctcgcgcgaaggtgctccacgagctcccgcgcgtgatcgtcaccgcggcg
cgcggcgcgtgccagccggtcttgccggcggtggagcccattacgattagcaccgcacag
gagtacgacttcacggagctggtgcgccggatcaacgggttcgcctacgaccacgtcgat
atggtggccaagcgcggggagtttgccacgcgcggcgggctgatcgatgtcttccccacc
acgggggagcaccccgtgcgcatcgagttttggggcgacgaggtcacggacatccgcacc
ttttccgtcgccgaccagcgcacgatcgatcccgtctcgcgcactgagctctaccccgcg
cgccagctgcttatcgacgactcagtcgccgccaaggcccgacagctcgcggaggatcac
cctggtaacccgacgctcgtgcagcttttgacgcggatttccgaacatcaccacgccgac
ggcatggaggcgctcatcccggtgctcaccgacgcgccctataaggccctgcccgagctg
ctaccggagggctccatcgtcgtggtgacgtcgcctgagaaggtccgggcccgcatcgcg
gacctggaggctactgaccgcgagttcctcgaggcgggctgggaggccgcggcgatgggg
gcgcagggcccggtcgcggtcgagggcctcgacgtctcggcgtcgtcgtatcgctcgttc
gaatccctcgaggcttccgcgcgcaaggcggggaactcctggtggactttcgcggcgccg
gggatgtttagcgccgacgatgccgaaacgctgcccttggagttttcctccgccccggcg
ccgaagggtgatccacgcgcgattgagcagctctttgccaccttgaagctccacgtgcag
tccaatggcggtactgccgcctttatcgccccggccaagggcacggtggagcgcttcgcg
gagaggctgcgcgagcacgggatctccgcgcgcatcgccacgccgggcctcgagcctgtc
gacggcaaagtcaccgtctaccagggtctctctcacgcaggcgtggtctttcccgggccg
aacatggtggtagtcacggagacggacctgaccggtaaccgcgtcggcgatatcgccggt
gccaagcgccgggcgcgcaagcgccgaaaccgcgtcgacccgctggcgctgaagccgggg
gatttcgtggtgcacgacacccacggcatcgggaagttcgtgaagatggccgagcgcacc
atcaaggcaggagacggagattcccgccgggaatacatcgtgctcgaataccagccggcg
aagcgggggcagcccaacgaccagctctgggtgcccatggagtccctcgatttgttgtcg
aagtactcgggcggtgagcagccgtcgttaagcaaaatgggcggctcggattggaaggcc
accaagcggaaggcgcgcgcggccgtgcgcgagatcgctggcgagctcgtggagctctac
gccaagcgccaggccgcgccgggccacgcgttcgccccggatacgccctggcagcaggag
atggaggagcgcttcccgttcgtcgagacggaggaccagatgacggccatcgaggcggtg
aaagaggatatggaaaagccgacgccgatggatcgtgtcatcgtcggcgacgtcgggttc
ggcaagaccgaggttgccgtgcgcgcggcgttcaaggccgtccaggacggcacgcaggtt
gcggtactcgtgccgacgacgctgcttgcgcagcagcatttctcgacgtttagcgagcgc
atggcgggcttcggcgtgaacatccgtgagctctcccgcttcacttcggcggcggactcc
aaggagatcatcgccgggcttgcggacggctccgtcgacgtggtcatcggcacccaccgc
ctgctcgccaccggcgtgcagtggaagaacctggggcttatcatcgtcgacgaggagcag
cgcttcggcgtcgagcacaaggagcacatcaaggcgctcaaatcgcacgtcgacgtgctc
acgatgacggcgaccccgatcccgcgcaccctcgagatgtcgctcaccggcatccgcgag
atgacctcgatcacgaccccgcccgaggaccgccacccggtgctcacctacgtcggcccc
caggaagacaagcagatcgccgccgcgatcaggcgcgaactgctgcgcgacggccaggtc
ttctacatccataacaaggtggccgacatcgaaaaggcggcgcgccgcgtgcgggatctc
gtcccggaggcgcgcgtcgtcgtcgcgcacgggcagatgtccgagcaggtcctcgagcag
accgtccagggtttttggaaccgcgagtacgacgtcctcgtgtgcaccacgatcgtggag
acgggcctggatatcgccaacgcgaacaccttgattgtggagaacgcgcagaacatgggc
ctgtcccagctccaccagctgcgcggccgcgtcgggcgctcgcgagaccgcgcctacgcc
tatttcttgtacccgaaggacaagacgctgaccgagacctcctacgacaggctcgcgacc
atcgcgcagaacaacgagctcggctccggcatcgcggtggcgcagaaggacctggagatg
cgtggggcgggcaacgtgctcggcgcggagcagtccggccacatcgccggcgtcggcttc
gacatgtacgttcggctcgtgggcgaggccgtcgagacgttcaaggcgatgatgtccggt
gagcccgttgacgcgaccgattccacgcccaaggagatccgcgttgacctgcctgttgac
gcccacatccccgagacctacgtcaactcggagcgcctgcgcctggagatctaccgcaag
ctcgcgcaggcgcgtgacgacgcctccttggacgccgtcgccgaggaaatggccgatcgc
tttgggccgctgccggacgaggtgacccgcctcatgcaggtcgcgcgcctgcgccaccag
gcgcgcagcgtcgggatcagcgacatcctcgtccaaggcacccggatcaagttccagccc
gtcgatctgcccgattccaagcaggtacgcctcaagcgcctctacccaggggcgaactac
cgcgccgcggcgaaggtgctccaggtaccgctaccaagggtggcccaaggcatcaaccag
ccgacactgcgcgacaccgagttggtgcagtgggtctcggacttcctggcagagatgttc
ggggccgaagccaaggttttctcgctgagcgagtaa
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