Chondrinema litorale: OQ292_08400
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Entry
OQ292_08400 CDS
T09098
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
clit
Chondrinema litorale
Pathway
clit02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
clit00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OQ292_08400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clit03021
]
OQ292_08400
Transcription machinery [BR:
clit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OQ292_08400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_WhiA
HTH_20
PCI
Motif
Other DBs
NCBI-ProteinID:
UZR95832
LinkDB
All DBs
Position
complement(2023671..2024282)
Genome browser
AA seq
203 aa
AA seq
DB search
MPEFDLFNENAILEGIKKGNRKIWAQVISAFYEPIFYFILGMVKQKEMAEELTQDVFANF
WIKREDINIETSLKSYLYRFARNHTLNFIKRSKFELDYYKNLSKTLTEHHTETEDNIQFT
ELDRLLKKEIENLPEECREIFKLSRYEELSYKEIADTLEIPVRRVHYQIGIALKTIREKL
KKQYGKEFFPVLLIVFMYLLNKF
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atgccagagtttgatctatttaatgaaaatgccattttagaaggtataaaaaaaggtaat
cgtaaaatttgggcacaagttatcagtgctttttacgagcctattttttactttatatta
ggaatggtaaagcaaaaagaaatggccgaagaacttactcaggatgtatttgctaatttc
tggataaaaagagaagacataaatatagagacttctctaaagtcatatttgtacagattt
gcacgaaatcacacattaaactttataaagcgatctaagtttgagttagattactataaa
aacctgagcaaaacccttacagagcatcatacagagaccgaagataacatccagtttacc
gagttagatagattactgaaaaaagaaattgaaaacctaccagaagaatgtcgagaaata
tttaaattgagcaggtatgaggaactatcttacaaagaaatagcagatacactcgaaatt
cctgtaagaagagtacattatcaaataggcattgctttaaaaaccattagagaaaagctg
aaaaaacaatatggaaaagaattttttccggttttgcttattgtattcatgtatttatta
aataaattttga
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