Clostridium ljungdahlii: CLJU_c09240
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Entry
CLJU_c09240 CDS
T01276
Symbol
recJ1
Name
(GenBank) single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
clj
Clostridium ljungdahlii
Pathway
clj03410
Base excision repair
clj03430
Mismatch repair
clj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLJU_c09240 (recJ1)
03430 Mismatch repair
CLJU_c09240 (recJ1)
03440 Homologous recombination
CLJU_c09240 (recJ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clj03400
]
CLJU_c09240 (recJ1)
DNA repair and recombination proteins [BR:
clj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CLJU_c09240 (recJ1)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CLJU_c09240 (recJ1)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLJU_c09240 (recJ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADK13992
UniProt:
D8GPT3
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All DBs
Position
1028290..1030065
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AA seq
591 aa
AA seq
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MQARWMLKRCKKDVKAIAKMAGISEVVASILVNREIETQGEIKSFINPSMRDLQNPLLMK
DMESGVDIIYSAIKEKKNIAVYGDYDVDGVMSTYILYCGLLRCGAMVKYHIPDRITEGYG
INIHSIEKLKEDGIQLIITCDNGISALEQIKRAMELNMQVVITDHHDIPFSDDEDGKRKF
LIPEADAVIDPKQEDCKYPFKKLCGAGVAFKFIQVLYDKFNIKKEEALKFIEYAAIGTIC
DVVDLIGENRVIAKKGLEMLNNTENLGIRELIKETSLEDKTLNSYHIGFVIGPCINATGR
LQSAALALELLLCKDPDRAHELAKKLHELNIHRQDMTINSLNKIIDKVEKSDLKKDKVLV
VYEKGVHESIAGIVAGRLKERYNVPSIVITNGKDFSKGSGRSIEGYNMFEELVKCKELMF
QFGGHPLAAGLSIEEENIDKLRDRLNRNCKLTDEDIIPKIRIDKQVPLNSISFKMIEDIK
RLEPFGKGNSTPVFGEKNVDVFRVYFIGKDKNTLKLFCRLKNSLNKIDALSFDGGEKFRQ
LIFKAYGSGAAYKILNNDFKNLKMDFIYLPSVNEYKGNRNIQLILKDFRLA
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggcaaggtggatgttaaaaaggtgtaaaaaagatgtaaaagctattgccaaaatg
gcaggaataagtgaagttgtagcttcaattcttgtaaatagggaaatagaaacacaggga
gagataaaaagttttataaatccctctatgagagatctccagaatccgctgctcatgaaa
gatatggaaagtggtgtggatataatatatagtgctataaaagagaaaaaaaatatagca
gtatatggagactatgatgtagatggagtaatgagcacctatatattatactgtggactt
ttaaggtgtggtgctatggtaaaatatcatattccagacagaattacagaaggctatgga
ataaatattcatagtatagaaaaactcaaagaagatggaattcagcttataataacttgt
gacaatggaatttcggcactagagcaaattaaaagggctatggaattaaatatgcaggta
gtcataactgaccatcatgatatacctttttcagatgatgaagatgggaaaagaaaattc
ttaattcctgaagcagatgctgttattgacccaaaacaggaagactgcaaatatcctttt
aaaaaactttgtggagcaggggttgcctttaaatttattcaggtgctttatgataaattt
aatataaaaaaggaagaggcacttaaatttatcgagtatgcagctattggaactatatgt
gatgtggtggatctcataggtgaaaatagagttatagctaaaaaaggacttgaaatgtta
aataacacagaaaatttaggaataagggaacttataaaagagacctcattagaagataaa
acattgaattcttatcatataggatttgtaataggaccttgtataaatgctacgggaaga
cttcaaagtgcagctttagcactggaacttttactttgcaaagatccggacagggcacat
gaacttgcgaaaaaacttcatgaattaaatattcataggcaggatatgacgattaacagt
ttaaataaaataatagataaagttgaaaagtcagatttgaaaaaggacaaagtacttgtg
gtatatgaaaaaggagtacatgaaagtatagcaggaatagttgcaggaaggcttaaagaa
agatataatgtaccctctattgtaataactaatggaaaagacttttctaaaggctcaggt
agatctattgaaggctataatatgtttgaagaacttgtaaaatgcaaggagttaatgttc
caatttggaggtcatcctttggcagcagggttgtctatagaagaagaaaatatagataag
cttagagatagattaaatagaaattgcaaacttacagatgaggatataatacccaagatt
agaatagataaacaggttcccttaaatagcatatcttttaaaatgatagaagatataaag
agattagagccttttggcaaaggaaattctacacctgtatttggagaaaaaaatgtggat
gtatttagggtttattttataggtaaggacaaaaatactttaaaactattctgcaggctg
aaaaatagcttaaacaaaattgatgcactgtcttttgatggaggcgaaaagtttagacaa
ttgatatttaaagcttatggaagtggggcagcctataaaattttaaataatgattttaaa
aatctaaaaatggattttatatatttgccttctgttaatgagtataaagggaataggaat
atacagcttatattgaaagattttagattagcatga
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