Campylobacter lari RM16701: UPTC16701_1165
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Entry
UPTC16701_1165 CDS
T03550
Symbol
uvrB
Name
(GenBank) UvrABC nucleotide excision repair complex, subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
clr
Campylobacter lari RM16701
Pathway
clr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UPTC16701_1165 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clr03400
]
UPTC16701_1165 (uvrB)
DNA repair and recombination proteins [BR:
clr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UPTC16701_1165 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UPTC16701_1165 (uvrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UB2H
Kinesin
Microtub_bd
SWI2_SNF2
Focal_AT
Motif
Other DBs
NCBI-ProteinID:
AJD05198
LinkDB
All DBs
Position
1145007..1146980
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AA seq
657 aa
AA seq
DB search
MFELTSDFKPSPDQKQAIDGIVKSIKAGNKYQTLLGVTGSGKTFTMANIIKNLNMPTLIM
SHNKSLCAQLYSEFKGFFANNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLR
LSASASLLSYDDVICIASVSANYGLGNPSEYVGMVLILELNMQISQKELLKKLVDMGYKR
NDNFFDRADFRVNGDIVDIYPAYYEDEAIRLEFFGDELEAMYHYNVLENKKGKDLKKFIL
YPTSQFSVGEARLKEAIKGIKAELNERLAYFENENKLVEAQRLKQRVEFDLEMLQSTGMC
KGVENYALHLTGLKSGDTPYTLFDYFAIKNQDFLVIVDESHVSLPQFRGMFAGDRSRKQT
LVDYGFRLPSALDNRPLMFDEFINKNCKFLFVSATPAPLELELSKENIFYQIMRPTGLLD
PKIEIKDSENQVEILYDEAKKVIERNERVLITVLTKKMAEELSKYYLELGLKVKYMHSEI
DAIERNEIIRGLRSGAFDILIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTALIQTMG
RAARNVNGKVLLFAKKITKSMQEAIDTTNERRTLQEAYNKKHNITPTSVKRNIEESLKHE
LEQGEIYRKGKELEKMPAKERAKIVKELRKQMLEAAKNLEFEKAAMLRDEINKLRTL
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaacttactagtgattttaagccaagtcctgatcaaaaacaagccattgatggt
atagtaaaaagcattaaagcaggtaataaataccaaaccttgctaggtgttacaggcagt
ggaaaaactttcactatggcaaatatcattaaaaacttaaacatgcccactcttatcatg
agtcacaataaaagcttatgcgcgcaactttatagtgaatttaaaggcttttttgcaaat
aatcatgtggagtattttataagctactatgattattatcaaccagaagcttatatacca
agaacggatgtttttatagaaaaagatagttccactaatgaagatttagaaagattaaga
ctaagtgcaagtgcttcgcttttaagttatgatgatgttatttgtatagctagtgtttcg
gcaaattatggcttaggaaatccaagtgagtatgtaggtatggttttaattttagaacta
aatatgcaaatttcacaaaaagagcttttaaaaaaacttgtagacatgggttataaacgc
aatgataatttctttgatagagctgattttagagtaaatggagatatagtagatatatat
ccggcttattatgaggatgaagctattaggcttgagttttttggcgatgagcttgaggcg
atgtatcattataatgtcttagaaaataaaaaaggtaaagatttaaaaaaatttatactt
tacccaaccagtcaatttagtgtaggtgaggctaggcttaaagaagctataaaaggcata
aaagctgaattaaacgaacgccttgcttattttgaaaatgaaaataaactcgtagaagca
caaaggctaaaacaaagagtagaatttgaccttgaaatgcttcaaagcactggcatgtgt
aaaggagttgaaaattacgctttgcatttaacaggacttaaaagcggtgatacaccttat
actctttttgattattttgccattaaaaaccaagactttttagtcattgtagatgaatcc
catgtatctttaccacaatttcgtgggatgtttgcaggggatagaagtagaaagcaaact
ttggttgattatggttttcgcttgccaagcgccttagataatagacctttgatgtttgat
gaatttattaataaaaattgtaaatttttatttgtttcagccacacctgcgcctttagaa
ctagaattaagcaaagaaaatattttttatcaaatcatgcgtccaacagggcttttagat
cctaaaatagaaatcaaagatagtgaaaatcaagtagaaattttatacgatgaagctaaa
aaagttatagaacgcaatgaaagagttttaataaccgttttaactaaaaaaatggctgaa
gagcttagtaaatactacttagaacttggtttaaaagtaaaatacatgcattcagaaatt
gatgcaatagagcgtaatgaaatcatccgtggtttaagaagtggtgcttttgatatttta
atcggaattaatcttttaagagaaggacttgacttgcctgaagtttctcttatagcgatt
atggatgcagataaagaaggctttttaagaagcaccactgcactcattcaaacgatgggg
cgtgctgctagaaatgtcaatggaaaagttttactttttgccaaaaaaatcacaaaatct
atgcaagaagctatcgatactaccaatgaaagaaggactttacaagaagcttataataaa
aaacacaacatcacaccaacatcagtaaaaagaaatatagaagaaagtttaaaacatgaa
cttgagcaaggagaaatttatcgcaaaggcaaagaacttgaaaaaatgcctgcaaaagaa
cgtgctaaaatagtaaaagaattaagaaaacaaatgttagaagcagctaaaaatcttgaa
tttgaaaaagcagcaatgcttagagatgagattaataaattaagaactttataa
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