Cyclopterus lumpus (lumpfish): 117725963
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Entry
117725963 CDS
T09199
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03015
mRNA surveillance pathway
clum03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117725963 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117725963 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117725963 (cpsf6)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
117725963 (cpsf6)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
117725963
NCBI-ProteinID:
XP_034381773
Ensembl:
ENSCLMG00005012613
LinkDB
All DBs
Position
23:8116525..8129401
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AA seq
599 aa
AA seq
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MADGVDHIDIYADVEEEFNQESDYPVHEQIDLYDDVISPSANNGDAPEDRDYLDTLPTPG
GSDGGKGAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRSVGITDVLEIKFFENRAN
GQSKGFALVCVGSEASSRKLMELLSKRELHGQNPIVTACNKQSLSQFEMQSRKIFLYFSG
TQSGQMSGEGKAGPPGAGLRGGFPMGRGRGRFPGPPGPGGDRFPGPVGPGGPPPHFPGPG
MRPDLIRHQDGPLMDMSFNPFPPGGRNGNWRGRGGMQGPPRPPLGPPGPPGPPGPPLPGQ
GLPPPLAGPPNRGDRLPPPVLFPGQFGQPPMGPLPPGPPPPGYGPPPGPPPPQQGPPPPG
PFPPRPPGPIGPPMALAPPPHMPGPPPGGPPPAPHVNPAFFPPPGNNNMPPNDNRGPPGP
NDPYGRPPPYERGDYGPGGREMEASRTPLSEAEFEEIMNRNRAISSSAISRAVSDASAAD
YGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSASSPMMLVHARRE
RSRERDHSRSREKSRRHKSRSRDRHEDYYRERSRERDRHRERDRDRDREREREREYRHR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggatcacatcgatatctacgccgacgtcgaagaggaattcaaccag
gaatctgactacccagtccatgaacagatcgacctgtatgatgatgtaatatccccatca
gccaacaatggtgatgctccagaagaccgcgactacctggacacgctgccaacaccaggt
ggttccgatggaggaaagggtgccccacccaacgtggtctatacctacacaggcaaaagg
attgccctgtacataggaaacctcacatggtggacaacagacgaggacctgacggaagct
atccgttcggtaggcatcacagatgtgctggagatcaagttctttgaaaacagagccaat
ggccagtccaaagggtttgcgttggtgtgtgtgggctcagaggcatcatcgagaaaatta
atggagctgctgtcgaagagggagctccatggtcagaatcccatcgtcaccgcgtgcaac
aagcagtccctcagccagttcgagatgcagtcacgtaagatcttcttatatttctcaggt
acccagtcagggcaaatgtctggggaaggtaaagctggtcctcctggtgctggtcttcgt
ggaggtttccccatgggtcgaggcagaggcaggttccctggaccacccggccccggtgga
gaccgctttcctggtcctgttgggcctggaggaccgccaccacatttccctggcccgggc
atgagaccagatctgattaggcaccaagatggccctctgatggatatgagtttcaatcca
ttcccgccggggggcaggaacgggaactggcgtggcagaggtggaatgcagggtcctcca
cgtcccccacttggtccacctggtccccctggtccaccaggacctccacttcctggtcag
ggcctcccccctccccttgctggtcctccaaatcgaggcgataggcttcctccccctgtt
ctattccctggtcagtttggccagccgccaatgggacccctgcccccaggtccccctcct
ccaggttatggccctcctcctggtcccccaccccctcagcagggcccaccacccccgggg
cccttcccaccacgtcccccaggccccattgggccccccatggctttggctccacctcca
cacatgccaggtcccccgccgggtggaccgccaccagcaccccatgtcaaccctgcattc
ttccccccacctggcaacaacaacatgccacctaatgacaaccgaggcccccctggacca
aacgacccatacggacgcccaccaccatatgaaagaggggactacggtcctggaggccgt
gagatggaggcgtcacggacccctctaagcgaggcagagtttgaggagatcatgaacagg
aacagagccatctcctccagcgccatatctagagcagtgtctgatgccagtgcagctgac
tatggcagtgctatagagaccttggtgacagctatcagtctgattaagcagtccaaagtg
tcagcagatgaccgctgtaaggtcctcatcagttccctgcaggactgtctccacggcatt
gagtcaaaaagctacggttcagcctccagtccaatgatgcttgtccatgccaggcgagaa
cgttccagggaacgggaccacagtcgctccagagaaaagagccgacgtcacaagtcccgc
agtcgtgacaggcatgaggactattaccgagaacgcagccgagagcgcgaccgccatcgc
gagagggaccgtgaccgcgaccgggagagagagagggaaagggagtaccgacaccgctag
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