Cyclopterus lumpus (lumpfish): 117729810
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Entry
117729810 CDS
T09199
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
clum01002
]
117729810 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117729810 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
clum04147
]
117729810 (usp13)
Enzymes [BR:
clum01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
117729810 (usp13)
Peptidases and inhibitors [BR:
clum01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
117729810 (usp13)
Ubiquitin system [BR:
clum04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
117729810 (usp13)
Exosome [BR:
clum04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117729810 (usp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
117729810
NCBI-ProteinID:
XP_034387071
Ensembl:
ENSCLMG00005022400
LinkDB
All DBs
Position
4:17966275..17994028
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AA seq
863 aa
AA seq
DB search
MAADLGELLVPYMPTVRVPRTGDRVFKSECAFSFDSPESEGGLYVCMNTFLGFGREHVER
HYRKTGQSVYMHLKRHVKEKATGAAGGAIPRRRNGKVFLDLELNRDFNGEDYEYEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAVLNAPSAYKKQEPESWDEEIQVSRHARSLRQLD
NGVRIPPSGWKCQKCVMRENLWLNLTDGAVLCGKWFFDGSGGNGHALEHYKETKYPLAVK
IETITPDGADVYSFEEEEAVLDPHISEHLSHFGIDKLQMQKKTENGHHTENNSRPRVSEW
EVIQESGMKLKAVFGSGYTGIKNLGNSCYLGTVMQVLFSIPDFQRMYVGNLQRIFDYSPL
DPSQDFATQMAKLGHGLLSGQYSKPPMKSELIEQVMKEESKVLNWHQQKGVPPRMLKALV
SRGHPEFSSNRQQDAHEFLLHVINVVERNSAGSENPSDVFRFLVEERVQCCQTRRVRYSQ
RVDYCIQLPAPIEAATNREELLAYETKRRDAEENMRAPPEPVRARIPFTACLQAFTEPEN
VPDFWSSALQAKSAAVKTSRFASFPEYLVLQIKKFTFGVDWVPKKLDLAIDVPDFLDLSR
LRAIGLQASEEELPDLLPPIVLAEDTRDNSMSSVDSPEIDEAAVMQLAEMGFPLEACRKA
VYYTGNMGPEMAFNWIIAHMEEPDFAEPLTLPSMVDPGPSTSDSPVGAALLSNSPPEESI
AILTSMGFPRAHSIQALKATNNNLERALDWIFTHPEEEESDALSDMADTEPNDNAFSNAN
SHSDSTLSPDRDVSGPRVKDGPGRYELFAFISHMGASTMSGHYVCHIKKEGRWVIYNDHK
VCLSERPPKDLGYIYFYHRLSSS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacctcggagagctgctggtcccgtacatgcccaccgtcagggtgcccagg
acaggagatagggttttcaagagcgagtgcgccttttccttcgactccccagagtcggag
ggaggcctttatgtgtgtatgaacacattcctgggctttggacgagaacatgtggagaga
cattatcgcaaaacagggcagagcgtttacatgcacctcaaacgacatgtcaaagagaaa
gccacaggagctgcaggaggcgccatccccagacgaagaaatggaaaggtgtttctagat
ttagagctaaaccgtgattttaacggagaggactatgaatatgaagacgaggccaagctg
gtcatttttccagaccacttcgagatccccttaccaaatattgaggagttgcccgctctg
gtgaccatcgcttgtgatgcagtgctcaacgcaccgtcagcttacaagaagcaggagcct
gaatcctgggacgaggagatccaggtgtccagacatgccagaagtctcagacagctggat
aatggggtcaggatcccacccagtggctggaagtgtcagaagtgcgtgatgagagaaaac
ctgtggttgaacctgacagatggagcagtgctctgtgggaagtggttctttgatgggagc
ggaggcaacggccacgctctggagcactacaaagagaccaaataccccctcgctgtcaaa
atagagaccatcaccccagacggagcagatgtctactcatttgaggaggaggaagctgtg
ctggaccctcacatatcagaacacttgtcacactttggaattgacaagctacagatgcag
aaaaaaacagagaacggtcaccacacagaaaataactcccggccgcgggtcagtgagtgg
gaggtgatccaggagtcgggcatgaagctgaaagcggtgtttggttctggttacacaggc
atcaaaaacctgggcaacagctgctacctcggcacagtgatgcaggtcctattcagcatc
ccagacttccagaggatgtatgttggtaatcttcagaggatatttgactattcacctctt
gaccccagccaggactttgccacacaaatggctaaactgggacacggactgctgtcaggc
cagtactccaaaccacccatgaaatctgagctcattgaacaggtgatgaaagaagaaagc
aaggtattaaactggcaccagcagaaaggcgtccctcctcgaatgttgaaggctctggtc
agcaggggacacccagagttttcctctaacaggcagcaagacgcccacgagttcctcctg
cacgtaatcaacgtggtggagaggaacagcgcaggctcagagaatccaagcgacgtcttc
cgcttcctggtggaggagcgagttcagtgctgccagacacgtcgggttcgttacagtcaa
cgggtggactactgcatccagctgccagctcccattgaggcggccaccaatcgagaggag
ctgctggcatatgagaccaagcggagggatgctgaggagaacatgcgggctcctccagag
ccggtgagagcccggatccccttcaccgcctgcctgcaggccttcacagagccagaaaac
gttcccgacttctggagctcagcgctgcaagccaagtcagctgcagtgaaaacttcccgt
ttcgcctccttcccagagtatctggttttgcagatcaagaaattcacattcggggttgac
tgggtgccaaagaaactagatttggccattgatgttccagactttctggatctgagccgg
ctgcgggctattgggctgcaggcgagtgaagaggagctgcctgacctcctgcctcccatc
gtactagctgaagacaccagagataattccatgagctccgtagactctccagaaatagac
gaggcggcagtaatgcagctggcagagatgggcttcccgctggaggcctgtaggaaggcg
gtctactacacaggcaacatgggccccgagatggccttcaactggatcatagctcacatg
gaggagcccgactttgcagaacctctcactctgccctccatggtggatcctggcccctcc
accagcgacagccccgtgggcgccgccctgctgagcaactcgccccccgaggagagcatc
gccatcctcacttcaatgggcttcccccgtgctcacagcatccaggccctcaaagccacg
aacaataacctggaacgagcactcgactggatcttcacccatccggaggaggaggagagt
gacgctctctcagacatggctgacacggagccaaatgacaacgctttctccaacgccaac
tcgcacagcgactccacgctgtctccagaccgagacgtgtcgggtccgcgggtcaaagac
ggaccgggacgttatgagctctttgctttcatcagtcacatgggagcatccacaatgtct
ggacattatgtttgtcacatcaaaaaggagggaaggtgggtgatctacaacgaccacaaa
gtgtgtttgtcagaaaggcctccaaaagacttgggctacatctacttttaccatcgacta
tctagcagctaa
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