Cyclopterus lumpus (lumpfish): 117730754
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Entry
117730754 CDS
T09199
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117730754
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117730754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_4
PRY
zf-RING_UBOX
SPRY
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
zf-RING_6
Prok-RING_4
Gp58
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
117730754
NCBI-ProteinID:
XP_034388605
Ensembl:
ENSCLMG00005017368
LinkDB
All DBs
Position
5:complement(1995573..1997936)
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AA seq
582 aa
AA seq
DB search
MLFRPEVRVSSEEVKLRHSLLPRGEMEPKGDQLDRETFSCSICLDLLKDPVTIPCGHSYC
MNCIKDHWDEEDGKKLLSCPQCRQTFTPRPVLLKNTMLAVVVEQLKKTGLQAAPADHCYA
GPEDVACDVCTGRRLKAFKSCLVCLVSYCEKHLQHHYDAPPLKKHQLVDPSNQLQENICS
RHNEVMKIFCRTDQQCICYLCSLDEHKGHDTVSAAAERTERQRELEGSRLNIQQRIQDRE
KDLKLLHQEVEAINLSADKTVEDSEKIFTKLIRLMEKRSSDVKQQVRSQQRTEVSRVKEL
QEKLEQEITELKRNDAELKLLSHTEDLNQLLHHYPSLSPLSGSTDSSSINIRPLRYFEDV
TAAVSGLRDELQDVLRDKWTNVSLTGTEVDVLLSAPEPTTRDGFLRCSCELTLDPNTADT
QLLLSDGNRKGTVMNEHQSYSSHPDRFSGWCLQVLSRESLTGRCYWEVEWRGGGVEVAVS
YKNIMRKGNECRFGYNNKSWALCCYNNSYNFWYNEVQTPVSGPWSSRLGVYLDHRAGILS
FYSVSGTMTLLHRVQTTFTQPLYAGLGLFSFSGETAEFCKLK
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcagacctgaagtcagagtctcttctgaggaagtgaaactcagacactcgttg
ttaccgagaggtgaaatggagcccaaaggagatcagctggaccgggagaccttctcttgt
tccatctgtctggatctcctgaaggatccggtgactattccctgtggacacagctactgc
atgaactgtattaaagaccactgggatgaagaggacgggaagaagctcctcagctgccct
cagtgtaggcagaccttcacaccgaggcctgtcctgctgaagaacaccatgttggcagtt
gtagtggagcagctgaagaagactggactccaagctgctcctgctgatcactgctatgct
ggacctgaagatgtggcctgtgatgtctgcactgggaggagactgaaggccttcaagtcc
tgtctggtgtgtctggtttcttactgtgagaaacacctccagcatcattatgatgcacct
ccattaaagaaacaccagctggtggacccctccaaccagctccaggagaacatctgctct
cgtcacaatgaggtgatgaagatcttctgccgtactgatcagcagtgtatctgctacctc
tgctctctggatgaacataaaggccacgacaccgtctcagctgcagcagaaaggaccgag
aggcagagagagctggaggggagtcgactaaacatccagcagagaatccaggacagagag
aaagacctgaagctgctccatcaggaggtggaggccatcaacctctctgctgataaaaca
gtggaggacagtgagaagatcttcactaagctgatccgtctcatggagaaaagaagctct
gatgtgaagcagcaggtcagatcccagcagagaactgaagtgagtcgagtcaaagagctt
caggagaagctggagcaggagatcactgagctgaagaggaacgacgctgagctgaagctg
ctctcacacacagaggatctcaaccagcttctccaccactacccctcactgtcaccactc
agtgggtctacagactcatccagcatcaacatccgtcctctgaggtactttgaggacgtg
acggcggctgtttcaggactcagagatgaactacaggacgtcctgagagacaagtggaca
aacgtctcactgacggggactgaagtggatgttttactgtctgcaccagagcccacgacc
agagatggattcttaagatgttcatgtgaactcactctggatccaaacacagcagacaca
cagctgttattatctgatgggaacagaaaaggaactgttatgaatgaacatcagtcttat
tctagtcacccagacaggttcagtggatggtgtcttcaggtcctgagtagagagagtctg
actggacgttgttactgggaggtggagtggagaggaggaggagttgaagtagcagtttca
tacaagaacatcatgagaaaagggaatgaatgtaggtttggatacaataacaaatcttgg
gctttatgttgttacaataacagttataacttttggtacaacgaagtccaaacccccgtc
tctggtccttggtcctccagactaggagtgtacctggatcacagagcaggtattctgtcc
ttctacagcgtctctggaaccatgactctcctccacagagtccagaccacattcactcag
cctctctatgctggacttgggttgttttctttttctggagaaactgctgagttctgtaaa
ctcaaatag
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