KEGG   Cyclopterus lumpus (lumpfish): 117738703
Entry
117738703         CDS       T09199                                 
Name
(RefSeq) ubiquilin-4-like isoform X1
  KO
K04523  ubiquilin
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117738703
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:clum04131]
    117738703
   03051 Proteasome [BR:clum03051]
    117738703
Membrane trafficking [BR:clum04131]
 Autophagy
  Chaperone mediated autophagy (CMA)
   Selective cargos
    117738703
Proteasome [BR:clum03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    117738703
SSDB
Motif
Pfam: ubiquitin STI1-HOP_DP UBA Rad60-SLD Ubiquitin_5 YukD CUE HOIP-UBA Dsc3_N Rad60-SLD_2 Symplekin_C
Other DBs
NCBI-GeneID: 117738703
NCBI-ProteinID: XP_034400648
Ensembl: ENSCLMG00005002604
LinkDB
Position
11:complement(10601370..10607905)
AA seq 663 aa
MIRKLTPDPSCSIGGIKMADQGAADPGNNNNNKPEASEGTIIKVTVKTPKDKEEIAIAED
ASVTQFKEEISRRFKAKQDQLVLIFAGKILKDGDSLSQHGIKDGLTVHLVIKTAHKAGDG
GSTSASSSTPTQAGNTSTSSPGTNSSSTAGSTGTAASPTQTPNILTGFGDLSGLAGLGMG
SANFMELQQQMQRQLMSNPEMLSQIMENPLVQNMMSNPDLMRQMIMANPQMQQLMERNPE
ISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMF
SAAREQFGNNPFSALGGNSESGAQPSRTENREPLPNPWGPPNSSNPSESGGAPTGSTSTT
GGTNPSVSNPLGINPGSLGNGMFNSPGMQSLMQQISENPQLMQNMLSAPYMRSMMQSLSQ
NPELASQVLMNNPLFAGNPQLQDQFRSQLPIFLQQMQNPEALSVMTNPRAMQALMQIQQG
LQTLQTEAPGLMPGLMSGGVPGGVPGGVPGGVPGGVPGGIPSGFPGLIPGLIPGIPTGGG
MPTENPASSPSSAGTNAAQQQLMQQMLQMFAGGGGGIAGGIGGGIAGGIAGGIGGGIGGI
GGIGGGVGGGNATTQTPEVRFQSQLDQLNAMGFINREANLQALIATGGDINAAIERLLGS
QPS
NT seq 1992 nt   +upstreamnt  +downstreamnt
atgatccggaagctgacgccagacccgagctgttccatcggcggaataaagatggctgac
caaggcgccgcagatcctggtaataacaacaataataaacctgaagcatcggagggaact
attatcaaggtcacagtaaaaaccccgaaagacaaagaagaaatcgccatcgcagaagat
gcgtctgtcactcagtttaaagaagagatctcgaggcggtttaaagccaaacaggaccag
ttggttctgatttttgcagggaagatcttgaaggatggcgacagcctcagccaacacggc
atcaaggatggcctgacagttcacctggtcataaagacagcacacaaggcaggagatggc
ggtagcacctcagcctccagctcaacccccactcaagcaggcaatacctccacctctagt
ccaggtacaaactcctcctccacagcaggctctactggcactgctgcatcacccacacag
acgcccaacatactgactggcttcggtgacctgtccggtctggctggactgggcatgggc
tcagctaactttatggagctgcagcaacagatgcagaggcagctgatgtccaacccagag
atgctgtctcagatcatggagaacccgttggtgcagaacatgatgtccaacccagacctg
atgagacaaatgatcatggccaaccctcagatgcaacagctaatggaacgcaaccctgag
atctcccacatgctcaacaaccctgagcttatgagacagaccatggagctggccaggaac
ccagccatgatgcaggaaatgatgcgaaaccaggaccgggctctgagcaacttggagagc
atcccaggaggttacaatgccttgcggaggatgtacacagacatccaggaacccatgttc
agcgctgccagggaacagtttggaaacaacccattctcagctctaggtgggaactctgag
tctggtgcccagccatcacggacagagaaccgggagcccctgcccaatccatgggggcct
ccaaattcctctaacccctctgagagtggtggagcccccacaggaagcacaagcaccact
ggaggcaccaaccccagtgtgtccaatcctctgggcatcaatcctggcagtctgggcaat
gggatgtttaacagccccggcatgcagagtctaatgcagcaaatttcggaaaacccacag
ctgatgcagaacatgctgtctgctccatacatgcgcagtatgatgcagtcactgtctcaa
aacccagagttagcctcacaggttttgatgaataaccccttgtttgctggaaacccacag
ctgcaggaccagttcagatctcagttgccaatttttctgcagcagatgcagaacccagaa
gccctgtcagtgatgaccaatccccgcgccatgcaagctctaatgcagatccaacagggt
ctacagacactgcagacagaagcaccaggcctcatgcccggtttgatgtcaggtggagtt
cccggtggagttcccggtggagttcccggtggagttcccggtggagttcccggaggaatt
cccagtggatttcctggcttaattcctggcttaattcctggcatacccacaggtgggggc
atgccaacagagaacccagcctcctcaccaagcagtgcaggaacaaacgctgcccagcaa
cagctgatgcaacagatgctccagatgtttgctggaggaggaggaggaattgcaggagga
attggaggaggaattgcaggaggaattgcaggaggaattggaggaggaattggaggaatt
ggaggaattggaggaggagttggaggaggaaatgcaacgacccagaccccagaagtgcgg
ttccagtcccagttggatcagctgaacgccatgggcttcatcaaccgcgaggccaacctt
caagccctcattgctactggaggagacatcaacgccgctatcgagagactgctgggctca
cagccctcgtaa

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