Cyclopterus lumpus (lumpfish): 117740794
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Entry
117740794 CDS
T09199
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117740794 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
clum00536
]
117740794 (col5a1)
Glycosaminoglycan binding proteins [BR:
clum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117740794 (col5a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
117740794
NCBI-ProteinID:
XP_034403244
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All DBs
Position
12:complement(1501791..1569035)
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AA seq
2084 aa
AA seq
DB search
MDTHIRWKVKRRIRDAQLTLAVLLLFVTSRASSVEPADLLKVLDFPSLPEGVTKSTGFCS
HRRSTQGPDVAYRVSKDAQLSAPTKQLYPGDVFPEDFSILATVKPKKGSQSFLLSVYNEQ
GIQQLGLEVGRSPVFLYEDHTGKPSPEDYPLFRGVNLADGKWHRVAISVHKQTITLILDC
KKKAAQKLLRSPHPIIDTKGIVVFGTRILDEEVFEGDIQQLLIVADHRAAYDYCEHYSPD
CEVPVPDQPQNQDPNTDEYNTEDSYYYEYPYYEDGDAKPLDSTSDAEATKEVKEIDADIV
GSRLEEVLRGSGATVDKVLTSSSSSSAASSSGTATDTGDAYGEETSPYESYDGYGNYENY
DEATPTPDEDAARRVTITGIGAEVDLGADGKVDLATGTGIEEKVIVGGGGSTITLTRNET
SGVSSYDVYDGEYDYGVDGKYTTGDGGGSSTVHLGGAGGGSTTHLGGGGGAGSSSTIHLG
GGGGEGGSSSTIHLGGGGGGGGSSSTIHLGGGGGEGGSSSTIHLGGGGGEGGSSSTIHLG
GGGGEGGSSSTIHLGGGGGSSSTVHLGGGGGSSSTVHLGGGGSSSSSTITIGGGSAGGGS
VSLGGSSTTGGGSASAGTGAGGSIATGKDLGVEGDGDYTDLEDGFKEDLVTDYDDMDVYD
AYGDLSYNEKEGKILPAVTDQYYGQVDGARGEKGQKGEPAVIEPGMLVEGPPGPEGPSGL
PGPPGASGPPGSSGDSGERGLPGRSGLPGADGLPGSPGTVLMLPFRFSSGGDSGQKGPAV
SAQESQMQAIMQQARLAMRGPTGPMGLTGRSGPLGPPGVSGLKGESGDAGPQGPRGPFGG
SGPSGKPGRRGRSGSDGARGMPGQSGPKGDRGFDGLAGLPGEKGHRGESGPSGPHGGPGE
DGERGDDGEIGPRGLPGESGPRGLLGPKGPQGPPGPPGVTGMDGHSGPKGNIGPQGEPGP
PGQQGNPGTQGLAGPQGAIGPPGDKGPTGKPGLPGMPGADGPPGHPGKEGPSGEKGHLGP
AGPQGPIGYPGPRGVKGADGVRGLKGHKGGKGEDGFPGFKGDMGLKGDRGELGPSGPRGE
DGPEGPKGRSGLPGDAGPLGTSGEKGKLGVPGLPGYPGRQGPKGSQGFQGFPGANGEKGT
RGTAGKSGPRGQRGPTGPRGERGPRGPTGKAGPKGNSGNDGPPGPLGERGLPGPQGPTGF
PGPKGPPGPSGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGDRGHPGP
PGPPGEQGLPGAAGKEGAKGDFGPAGPAGKDGPPGPRGFPGERGLPGPVGAHGLKGSEGP
HGPPGPAGSPGERGPAGSAGPTGLPGRSGPQGPPGPSGEKGGPGEKGPQGPAGRDGIQGP
VGLPGPGGPPGPPGEDGDKGELGEPGQKGGKGDKGEHGPPGPTGPQGPVGAPGPAGADGE
PGPRGQQGLFGQKGDEGLRGFPGPLGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGP
SGPPGADGPQGPPGGIGNPGSVGEKGDSGETGEPGLQGELGPPGARGERGEKGESGPAGT
AGPPGPKGPPGDDGPKGSPGPSGFPGDLGPPGEPGPAGLDGPAGDKGDDGEAGQAGSPGP
TGESGPSGPPGKRGPPGVTGPEGRQGEKGTKGESGMEGSQGKTGPVGPQGSPGKPGSEGL
RGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGIKGEKGHPGLIGLIGPSGEQGE
KGDRGLPGPPGSHGYKGDNGISGPSGPLGPLGPPGLPGPPGPKGAKGSSGQTGPKGETGT
SGPPGPPGPPGDVIHPLPMMSSMKGRSRRNIDASQMADDAGAADANYKDYDDGMEEIFGS
LNSLKLEIEQMKHPLGTQNNPARTCKDLQLCHPDFPDGDYWIDPNQGCSRDSFKVYCNFT
AGGESCIFPDKKSEGARLTSWVKESPGSWFSEFKRGKLLSYVDAEGNPISVVQMTFMRLL
SASARQNMTYNCYQSVAWHDQNLDNHDKAIRFLGSNDEEMSYDNNPYIRAVVDGCALKKG
YEKTVLEINTPKVEQVPFVDIMFNDFGGSTQKFGFEVGPVCFVG
NT seq
6255 nt
NT seq
+upstream
nt +downstream
nt
atggatacccatataagatggaaagttaaacggaggatacgggacgcccaactcacttta
gcggtgctcctgctttttgtcacatcgagagcgagttcagtggaaccggcggacctcttg
aaggttttagattttcccagtttacccgagggcgttacaaaatcgacgggcttctgctca
catcggaggtcgacacaaggacccgatgtggcttaccgagtatccaaagacgcccagctc
agcgcccccaccaaacagctgtatccaggcgacgtgttcccggaggacttctccatcttg
gccacggtgaagccgaagaagggcagccagtccttcctgctgtccgtgtacaacgagcag
ggcatccagcagctgggcctggaggtgggccgctcgccggtgttcctgtacgaggaccac
acgggcaaacccagccccgaggactacccgctcttcaggggagtcaacctggcggacgga
aagtggcatcgagtggccatcagcgtgcacaagcagaccatcaccctcattctggactgt
aaaaagaaggccgcccagaagctgctgcgaagccctcaccccatcatcgacaccaaggga
atcgtagtgtttggaactagaatactggacgaggaagtcttcgagggagacatccagcag
ctgctgattgtagcagaccaccgcgctgcctatgactactgtgagcactacagccccgat
tgtgaagtgcccgtgcccgaccagcctcagaaccaggaccccaacacagacgaatacaac
acagaggacagctactattatgaatacccctactatgaggacggggatgccaagcctttg
gattctacatctgatgctgaggcaacaaaagaagtcaaggagatagatgcagacatcgtg
gggtccagattggaggaggttctgaggggctctggtgccaccgtggacaaagtgttgacc
agctcctccagcagctccgcggcgagctcttcgggcaccgccaccgacaccggagacgcc
tacggagaggagaccagtccctacgagagctacgacggctacgggaactacgagaactac
gacgaggccacgccgacgcccgacgaggacgccgctcgacgcgtcaccatcaccggcatc
ggcgccgaggtggatctgggcgcagacggaaaggttgacttggccacagggaccggaatc
gaggaaaaggtcatcgtcggtggaggaggatccacgattaccctcaccaggaatgagaca
tcaggagtaagttcctacgatgtctacgacggggaatacgattatggcgtggacggcaaa
tacaccactggtgatggcgggggcagcagtacagtccaccttggaggtgcaggcgggggc
agtaccacccaccttggaggtggaggaggcgccggcagtagcagtacaatccaccttgga
ggcggaggaggtgaaggaggcagcagcagtacaatccaccttggaggcggaggaggtgga
ggaggcagcagcagtacaatccaccttggaggcggaggaggtgaaggaggcagcagcagt
acaatccaccttggaggcggaggaggtgaaggaggcagcagcagtacaatccaccttgga
ggcggaggaggtgaaggaggcagcagcagtacaatccaccttggaggcggaggaggcagc
agcagtacagtccaccttggaggcggaggaggcagcagcagtacagtccaccttggaggt
ggaggcagcagcagcagttctaccatcaccatcgggggcggctctgccggaggcggctcc
gtctccttgggaggatcttccaccactggagggggatcggccagcgccggcaccggagca
gggggctccatcgccaccggaaaggacctgggcgtggaaggcgacggcgactacacggat
ctggaggacgggttcaaggaggacctcgtcaccgactacgacgacatggacgtctacgac
gcctacggggacctgagctacaacgagaaagagggcaagatcctgcctgccgtgaccgat
cagtattacggacaggtcgacggagcccgaggagagaagggacagaagggagagcctgct
gttatcgagcctgggatgctcgtggagggtcctcctgggcctgaagggccatcaggtctc
cccggacccccaggtgcttctggcccaccaggcagttctggagattctggagagaggggt
cttccgggtcgctctggtcttcctggtgccgacggcttgccaggaagtcctggaacggtg
ctgatgctgcctttcagattcagctctggaggcgactccggtcagaaggggcccgccgtg
tcagcgcaggagtcccagatgcaggccatcatgcagcaggcccggctggctatgcgcggc
cctacaggtccaatgggtttgactggcagatccggccctctgggtcctccaggtgtatca
ggactgaagggagagtctggagatgcaggccctcagggaccacgtggaccttttggtggc
tcgggaccctccggaaagcccggcagaaggggtcgctctggatccgacggtgccaggggc
atgccgggacagtctggacccaagggagaccgagggttcgatggactggccggacttccc
ggtgaaaaaggacacagaggtgaatctggcccttctggacctcacgggggtcctggagag
gacggagaaaggggagatgatggagagatcgggccccggggacttcccggtgaatcaggg
cctcgtggtttgctgggacccaaaggacctcagggacccccaggaccccccggcgtgacg
gggatggacggccactccggacccaaaggaaacatcggacctcaaggagagccaggacct
cctggacagcaaggtaacccaggtacccagggactcgcagggccccaaggagccatcggg
cctccaggagacaagggtcctacggggaaaccaggcttgccgggaatgccaggagctgat
ggtccaccgggtcaccccggaaaggaggggccttctggagagaaaggacacctgggcccg
gctggccctcaaggacccattggttatccggggccccgaggcgtgaagggagcggacggc
gtgcgaggactgaaaggacacaagggtggaaagggagaagatggcttccccggcttcaag
ggggacatgggcctgaagggcgacaggggagagctcggaccctcggggcccagaggagag
gacggtcccgagggaccaaagggtcgatcgggtctcccaggagatgccggtcctctggga
acgagtggtgagaagggtaaactcggagtccccgggttgcctggatacccaggaagacaa
ggacccaagggatctcaaggtttccaaggtttcccaggcgccaatggagagaaaggaact
cggggaacagcaggaaagtctggcccccgcggacagagaggaccaacgggccctcgagga
gagagaggaccgaggggaccgacggggaaagccggaccgaagggtaactcaggaaacgac
ggccctccaggaccgctcggcgagaggggtctgccaggccctcagggaccaacaggtttc
ccaggaccaaagggacctcctggtccttcagggaaagacggactgcccggacaccctgga
cagagaggagagaccggattccaaggcaagactggtcctcctggcccccccggcgtggtc
ggacctcagggaccaacaggtgaaactggaccaatgggagatcgaggtcaccctggaccc
ccaggcccacctggtgagcagggtctaccgggagctgcagggaaagaaggagccaagggt
gacttcggtcctgctggcccagcaggtaaggacggccctccagggccaagagggttcccg
ggagagagaggcctgcctggccctgtgggggcgcacggcttgaaagggagtgaaggacct
cacggaccgcctggccctgctggttctcctggtgagcgtggtcctgccggctcagccgga
cctacaggtctccccggacgttctggcccccagggacctccgggcccttctggagagaaa
ggtggaccgggagagaaaggacctcaaggcccagctggaagagacgggattcagggccct
gtgggtctgccgggacctggaggacctcccggaccacctggggaggacggagacaaggga
gagcttggagaaccgggccaaaaaggaggcaagggggacaaaggagaacatggtccacct
ggtcccaccggccctcaagggcccgtcggagcacccggtcccgctggtgcagatggcgag
cccggtcccagaggtcagcagggtctgttcggccagaagggagatgaagggttgaggggg
ttccccggacctctaggtccagtcgggctgcagggcttacctggtccacctggtgagaaa
ggtgaaactggagacgttggtcaaatgggtccacccggcccccctggtccaagaggcccc
tcaggacccccaggagccgatggccctcagggacctccaggcggcattggaaaccctggt
tcagttggagaaaagggagattctggtgaaaccggagagccaggtcttcagggagaactt
ggcccacctggtgctagaggcgagcgaggagaaaagggagagtccggtccggctggtaca
gctggtcctcctggccctaagggtccccctggagacgatggtcccaaaggaagcccaggc
ccaagtggtttccccggtgacctgggcccccctggagagcccggtccagctggcttagac
ggacccgccggtgacaagggagatgatggagaggccggtcaagctggttctcctggaccc
accggagagtcgggtccctccggaccaccagggaagagagggccccctggtgtcacggga
cctgaaggaagacaaggagagaagggcacgaagggggagtctggcatggaaggttcccaa
ggaaagacgggtcccgtcggccctcaaggatcgcccggcaagcccggttctgaaggcctc
cggggcatccccggcccagttggagagcaaggcctgcctggttctccgggcccagatgga
cctcccggaccgatgggtccgcccggcttacccggcttgaaaggagactcaggtatcaaa
ggagaaaagggccacccgggtctcatcggtctcatcggaccttcaggtgaacagggagaa
aagggggaccgaggtctccccggtcctccgggatcccacggttacaaaggagacaacggt
atttcaggaccctcagggccactcgggcccctcggcccccccggattacctggtcccccc
ggtcccaaaggagctaaaggctcatcgggtcaaaccggaccgaagggagagaccggtacc
tctggacctcccggccctcccggccctcccggcgatgtcatccaccccctccccatgatg
tcctccatgaagggccggagtcgcaggaacatcgacgccagccagatggcggacgacgcc
ggcgccgcggacgccaactacaaggactacgacgacggcatggaggagatcttcggctcg
ctcaactccctgaagctggagatcgagcagatgaagcatccgctgggcacgcagaacaac
ccggcgcgcacctgcaaagacctgcagctgtgccaccccgacttccccgacggtgactac
tggatcgatccaaaccagggctgctctcgggactccttcaaggtttactgcaacttcaca
gcaggtggagagagctgcatcttccccgataagaagtctgaaggggctaggctcacgtcc
tgggtcaaggagagtcccggctcatggttcagtgaattcaaacgtggtaaactgctctcc
tacgtggatgccgagggcaaccccatcagcgtggtccagatgaccttcatgcgcctgctg
agcgcgtcggcccgacagaacatgacgtacaactgctaccagtcggtggcctggcacgac
cagaacctcgacaaccacgacaaggccatccgcttcctgggctccaacgacgaggagatg
tcctacgacaacaacccctacatcagggccgtggtggacggctgcgcgttgaagaagggc
tatgagaagacggtcctggagatcaacaccccgaaggtggagcaggtcccgttcgtggac
atcatgttcaacgacttcggcggctccacgcagaagttcggcttcgaggtcggtccggtg
tgcttcgtcggctga
DBGET
integrated database retrieval system
